Locus 8518

Sequence ID 3R_DroMel_CAF1
Location 22,744,875 – 22,744,966
Length 91
Max. P 0.992540
window13695

overview

Window 5

Location 22,744,875 – 22,744,966
Length 91
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 93.79
Mean single sequence MFE -20.86
Consensus MFE -18.34
Energy contribution -18.54
Covariance contribution 0.20
Combinations/Pair 1.09
Mean z-score -1.96
Structure conservation index 0.88
SVM decision value 2.34
SVM RNA-class probability 0.992540
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22744875 91 + 27905053
AUUUUAAAUUUUUGUUGCCACCUUCAAGGUCAACGAAUAUCGUUAAAAUGCCUUGUCGUUGGCCUGAAGAACCACAAAACAGA------AAGCAUUU
........((((((((.....(((((.(((((((((.((..((......))..))))))))))))))))........))))))------))...... ( -24.12)
>DroSec_CAF1 34815 91 + 1
AUUUUAAAUUUUUGUUGCCACCUUCAAGGUCAACGAAUAUCGUUAAAAUGCCUUGUCGUUUGCCUGAAGAACCAGAAAACAGA------AAGCAUUU
........((((((((.....(((((.(((.(((((.((..((......))..))))))).))))))))........))))))------))...... ( -18.82)
>DroSim_CAF1 34891 91 + 1
AUUUUAAAUUUUUGUUGCCACCUUCAAGGUCAACGAAUAUCGUUAAAAUGCCUUGUCGUUGGCCUGAAGAACCAGAAAACAGA------AAGCAUUU
........((((((((.....(((((.(((((((((.((..((......))..))))))))))))))))........))))))------))...... ( -24.12)
>DroEre_CAF1 37171 91 + 1
AUUUAAAAUUUUUGUUGCCACCUUCAAGGUCACCGAAUAUCGUUAAAAUGCCAUGUCGUUGGCUUGAAGAACCAGAAAGCAGA------AAGCAUUU
........((((((((.....(((((((.(((.(((.(((.((......)).)))))).))))))))))........))))))------))...... ( -18.62)
>DroYak_CAF1 36462 97 + 1
AUUUUAAAUUUUUGUUGCCACCUUCAAGGUCACCGAAUAUCGUUAAAAUGCCAUGUCGUUGGCUUGAAGAACCAGAAAACAGAAACCGAAAGCAUUU
........((((((((.....(((((((.(((.(((.(((.((......)).)))))).))))))))))........)))))))).(....)..... ( -18.62)
>consensus
AUUUUAAAUUUUUGUUGCCACCUUCAAGGUCAACGAAUAUCGUUAAAAUGCCUUGUCGUUGGCCUGAAGAACCAGAAAACAGA______AAGCAUUU
..........((((((.....(((((.(((((((((.....((......))....))))))))))))))........)))))).............. (-18.34 = -18.54 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:10 2006