| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,735,574 – 22,735,694 |
| Length | 120 |
| Max. P | 0.540103 |
| Location | 22,735,574 – 22,735,694 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.67 |
| Mean single sequence MFE | -42.17 |
| Consensus MFE | -27.64 |
| Energy contribution | -28.17 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540103 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22735574 120 - 27905053 CAGAAUCAGCAGCUUUGCCAGAUCCCGGACGAUGGGCCUGUACGAGUUGGCAGCCGCCACUUCACCCGACAAAUAGAGCUUCCUGAUCUGCCGCCGGGUAUCGUUCAGCAUGGCCAGAAA ((((.((((.(((((((.(((..((((.....)))).)))...(((.((((....)))).)))..........)))))))..))))))))..((((.((........)).))))...... ( -34.10) >DroVir_CAF1 40154 120 - 1 CAGGAUGAGAAGCUUGGCCAGAUCCCGAACGAUGGGUCGAUAUGAGUUGGCAGCCGCCACCUCGCCGGACAAAUAAAGUUUGCGUAUUUGUCGGCGCGUGUCAUUCAGCAUGGCCAGAAA .............((((((((((((........)))))((((((((.((((....)))).)))((((.(((((((..(....).)))))))))))..)))))........)))))))... ( -43.10) >DroGri_CAF1 46630 120 - 1 CAGGAUGAGCAACUUGGCCAGAUCCCGCACAAUGGGACGAUAGGAGUUGGCGGCCGCCACCUCGCCUGAUAAAUAUAGUUUACGGAUUUGCCGGCGAGUGUCGUUCAACAUGGCCAGAAA .............(((((((..(((((.....)))))(((((.....((((....)))).((((((.(.(((((...(....)..)))))).))))))))))).......)))))))... ( -38.20) >DroWil_CAF1 40499 120 - 1 UAAAAUUAACAAUUUGGCCAGAUCCCUUACUAUGGGACGAUAUGAAUUGGCAGCAGCCACUUCGCCGGAUAGAUAUAAUUUACGUAUCUGUCGUCGUGUAUCAUUCAACAUGGCCAGAAA ............((((((((..((((.......)))).((((((((.((((....)))).)))....(((((((((.......))))))))).....)))))........)))))))).. ( -39.30) >DroMoj_CAF1 36620 120 - 1 CAAUAUCAGCAGCUUGGCCAGGUCCCGGACAAUGGGCCGAUACGAGUUGGCCGCUGCCACCUCGCCGGACAAAUACAGUUUGCGUAUUUGCCGGCGCGUGUCGUUCAGCAUGGCCAGAAA .............(((((((((.((((.....))))))((((((((.((((....)))).)))(((((.(((((((.......))))))))))))..)))))........)))))))... ( -53.20) >DroAna_CAF1 24167 120 - 1 CAAGAUGAGCAGCUUGGCCAGAUCCCGGACAAUGGGCCGGUAGGAGUUGGCAGCCGCCACCUCCCCGGAGAGAUAGAGCUUGCGUAUCUGGCGACGCGUGUCAUUGAGCAUGGCCAGGAA ............((((((((..((...((((.....((((..((((.((((....)))).)))))))).........((((((.......)))).)).))))...))...)))))))).. ( -45.10) >consensus CAAGAUGAGCAGCUUGGCCAGAUCCCGGACAAUGGGCCGAUACGAGUUGGCAGCCGCCACCUCGCCGGACAAAUAGAGUUUGCGUAUCUGCCGGCGCGUGUCAUUCAGCAUGGCCAGAAA .............(((((((...((((.....))))..((((((((.((((....)))).)))..(((.(((((((.......))))))))))....)))))........)))))))... (-27.64 = -28.17 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:09 2006