Locus 8516

Sequence ID 3R_DroMel_CAF1
Location 22,734,085 – 22,734,185
Length 100
Max. P 0.767860
window13693

overview

Window 3

Location 22,734,085 – 22,734,185
Length 100
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 85.90
Mean single sequence MFE -33.98
Consensus MFE -24.32
Energy contribution -25.56
Covariance contribution 1.24
Combinations/Pair 1.15
Mean z-score -1.99
Structure conservation index 0.72
SVM decision value 0.52
SVM RNA-class probability 0.767860
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22734085 100 + 27905053
GCACAGCUCUCAGGAUUGAAGAUGCCAGAUUCAAGAUUCAAGAUCCAUGCC-AGAUCUGGGGUAUGGGAGUGCAGUUCCAACUCCCGCCUGGGGGAUGUGU
(((((.((((((((.......((.(((((((((.((((...))))..))..-.))))))).))..((((((.........)))))).)))))))).))))) ( -38.10)
>DroSec_CAF1 24137 101 + 1
CCACAGCUCUCAGGAUUCGAGAUGCCAGAUUCAAGAUUCAAGAUCCAUGCCUGGAUCUGGAGUAUGGGAUUGCAGAUCCAACUCCCGCCUGGGGGAUGUGU
.((((.((((((((....(((.(((..(((((...((((.(((((((....))))))).))))...)))))))).......)))...)))))))).)))). ( -37.20)
>DroSim_CAF1 24249 101 + 1
CCACAGCUCUCAGGAUUCAAGAUGCCAGAUUGAAGAUUCAAGAUCCAUGCCUGGAUCUGGAGUAUGGGAUUGCAGAUCCAACUCCCGCCUGGGGGAUGUGU
.((((.((((((((.(((((.........)))))......(((((((....)))))))(((((...(((((...))))).)))))..)))))))).)))). ( -37.80)
>DroEre_CAF1 26204 100 + 1
CCACAGCUCUUAGGAUUCCAGAUUCCAGAUUCAAGAUUCAAGAUCCAUCCC-AGAUCUGGGGUAUGGGACUCCAGAUCCAACUCCCGCCUGGGGGAUGUGU
.((((.......((((((((.((((((((((...(((.........)))..-.)))))))))).))))).)))........(((((....))))).)))). ( -32.20)
>DroYak_CAF1 25617 91 + 1
CCAGUGCCAU---------GGACUCCACAUUCAAGAUUCAAGAUCCAACCC-AGAUCUAGGGUAUGCGAUUCCAGAUCCAACUCCCGCCUGGGGGAUGUGU
(((......)---------))....(((((((..((((...))))...(((-((.....(((..((.((((...))))))...)))..)))))))))))). ( -24.60)
>consensus
CCACAGCUCUCAGGAUUCAAGAUGCCAGAUUCAAGAUUCAAGAUCCAUGCC_AGAUCUGGGGUAUGGGAUUGCAGAUCCAACUCCCGCCUGGGGGAUGUGU
.((((.((((((((..........................(((((........)))))(((((...((((.....)))).)))))..)))))))).)))). (-24.32 = -25.56 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:08 2006