Locus 8514

Sequence ID 3R_DroMel_CAF1
Location 22,732,064 – 22,732,160
Length 96
Max. P 0.811112
window13690

overview

Window 0

Location 22,732,064 – 22,732,160
Length 96
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.59
Mean single sequence MFE -20.97
Consensus MFE -16.37
Energy contribution -16.12
Covariance contribution -0.25
Combinations/Pair 1.06
Mean z-score -1.46
Structure conservation index 0.78
SVM decision value 0.65
SVM RNA-class probability 0.811112
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22732064 96 - 27905053
CUG--CGCAUGC---GCAAGCGGCGUUUAUUAAAAUAACGGCACUUAAGUACGCCCUAAGCAAACUGCACUCAACUGCAGACCCCAA-GACAUGCAACUCAC
.((--(((..((---....))(((((...((((...........))))..)))))....))...(((((......))))).......-.....)))...... ( -24.00)
>DroVir_CAF1 34742 91 - 1
CUAUGUGCAUGC---CCAGGCGGCGUUUAUUAAAAUAACGGUACUUAAGUGCGCCCUAAGCAAACUGCAAUC------GCAACAAGC-CACAUGCAACAAG-
...((((((((.---...(((((((((.........))).((((....)))))))..........(((....------)))....))-).))))).)))..- ( -22.60)
>DroEre_CAF1 24169 94 - 1
CUG--CGCAUGC---GCAAAUGGCGUUUAUUAAAAUAACGGUACUUAAGUGCGCCCUAAGCAAACUGCACUCAACUCGAGACUCCA---ACAUGCAACUCAC
...--.(((((.---((....((((((.........))).((((....)))))))....))........(((.....)))......---.)))))....... ( -19.20)
>DroWil_CAF1 36843 88 - 1
UUGCGCGCAUGCGCAGCAAGCGGCGUUUAUUAAAAUAACGGUACUUAAGUACGCCCUAAGCAAACUGCACUCAA--------------GACAUGCAACUAAC
.(((((....)))))(((((.((((((.........))).((((....)))))))))..((.....))......--------------....)))....... ( -21.40)
>DroYak_CAF1 23566 94 - 1
CUG--CGCAUGC---GCAAAUGGCGUUUAUUAAAAUAACGGUACUUAAGUGCGCCCUAAGCAAACUGCACUCAACUCGAGACCGCA---ACAUGCAACUCCA
...--.(((((.---((....((((((.........))).((((....)))))))....))....(((.(((.....)))...)))---.)))))....... ( -20.80)
>DroAna_CAF1 20962 95 - 1
CUGGCCGCAUGA---GCAAACGGCGUUUAUUAAAAUAACGGUACUUAAGUACGCCCUAAGCAAACUGCACUCCACUCCAGACCCCAUCAACAUGCAAC----
......(((((.---((....((((((.........))).((((....)))))))....))...(((..........)))..........)))))...---- ( -17.80)
>consensus
CUG__CGCAUGC___GCAAACGGCGUUUAUUAAAAUAACGGUACUUAAGUACGCCCUAAGCAAACUGCACUCAACUC_AGACCCCA___ACAUGCAACUCAC
......(((((..........(((((...((((...........))))..)))))....((.....))......................)))))....... (-16.37 = -16.12 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:05 2006