Locus 8512

Sequence ID 3R_DroMel_CAF1
Location 22,720,227 – 22,720,317
Length 90
Max. P 0.991322
window13687

overview

Window 7

Location 22,720,227 – 22,720,317
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 77.49
Mean single sequence MFE -14.88
Consensus MFE -7.60
Energy contribution -9.77
Covariance contribution 2.17
Combinations/Pair 1.00
Mean z-score -3.12
Structure conservation index 0.51
SVM decision value 2.26
SVM RNA-class probability 0.991322
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22720227 90 - 27905053
ACAAAUUCACGAAAAAUCCGAAAAGAAAAAAAAGAAUAACAACAGAAGACUUCUUCUUUGGCCAAGAGAACCAGUUUCUGUGGCCAAAAC
............................................((((....))))(((((((((((((.....))))).)))))))).. ( -17.90)
>DroSim_CAF1 10452 86 - 1
ACAAAUUCACGAAAAAUCAA----AAAAAAAAAGAAUAACAACAGAAGACUUCUUCUUUGGCCAAGAGAACCAGUUUCUGUGGCCAAAAC
....................----....................((((....))))(((((((((((((.....))))).)))))))).. ( -17.90)
>DroEre_CAF1 11899 84 - 1
AUAAAUUCACGAAAUAUCCACAAA--AAA----GAAUAACAACAGAAAACUUCUUCGUUGGCCAAGAGAACCAGUUUCUCUGGCCAAAAC
........................--...----...........(((......))).(((((((.(((((.....))))))))))))... ( -16.60)
>DroYak_CAF1 11004 88 - 1
ACAAAUUCACGAAAAAUCCACAAA--AAAAAAGGAAUAACAACAGAAAACUUCUUCUUUGGCCAAGAGAACCAGUUUCUGUGGCCAAAAC
................(((.....--......))).....................(((((((((((((.....))))).)))))))).. ( -15.80)
>DroMoj_CAF1 15272 71 - 1
AUAAAUUCUUGUUG--GCCACAAA--AAA---UGUGUAAAAA---AAAACGUCUUCA---GCAGUGAGAACCAGUUUC------AAAAAC
.....((((..(((--..((((..--...---))))......---.....(....).---.)))..))))........------...... (  -7.70)
>DroAna_CAF1 9398 81 - 1
CCAAAUUCACGAAAAAUUCACAAA-----AAAAGAAUAACAACAGAAAACUUCUUCUUUGGCCAAG--AACCAGUUUCU--GGCCAAAAC
........................-----...........................((((((((..--((....))..)--))))))).. ( -13.40)
>consensus
ACAAAUUCACGAAAAAUCCACAAA__AAAAAAAGAAUAACAACAGAAAACUUCUUCUUUGGCCAAGAGAACCAGUUUCUGUGGCCAAAAC
........................................................(((((((((((((.....))))).)))))))).. ( -7.60 =  -9.77 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:02 2006