| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,716,488 – 22,716,584 |
| Length | 96 |
| Max. P | 0.982528 |
| Location | 22,716,488 – 22,716,584 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 76.75 |
| Mean single sequence MFE | -21.64 |
| Consensus MFE | -12.45 |
| Energy contribution | -12.86 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22716488 96 - 27905053 GCGGCCAAAAGAAAAUCCCCAAAAAUAAUGCCAACAACAUUUGUCGCCAUGUCGCCGAUGAUGAAAUU------UUCAUUGGCGCCAAACGAAAUCAAACGC (((((........................)))...........(((...((.(((((((((.......------.))))))))).))..)))........)) ( -19.76) >DroSec_CAF1 6805 87 - 1 GCGGCCAAAAGAAAAUCC-CAAAAAUAAUGCGAACAACAUUUGUC--------GCCGAUGAUGAAAUU------UUCAUUGGCGCCAAACGAAACCAAACGC (((............((.-((.......)).))....(.((((.(--------((((((((.......------.))))))))).)))).)........))) ( -18.90) >DroSim_CAF1 6730 93 - 1 GCGGCCAAAAGAAAAUCC-CAAAAAUAAUGCGAACAACAUUUGUC--------GCCGAUGAUGAAAUUUUUUUUUUCAUUGGCGCCAAACGAAACCAAACGC (((............((.-((.......)).))....(.((((.(--------((((((((.((((....)))).))))))))).)))).)........))) ( -20.30) >DroEre_CAF1 8116 84 - 1 GCGGCGAAAAGAAAAUCC-CAAAAAUAAUGCGAACCGCAUUUGUCGCCAUGUCGCCGAUGAUGAAAUU------UUCAUUGGCGCCAAACG----------- ..(((((...........-.......((((((...))))))..))))).((.(((((((((.......------.))))))))).))....----------- ( -27.05) >DroYak_CAF1 7140 92 - 1 GCGGCGAAAAGGAAAUCC-CAAAAAUAAUGCGAACAACAUUUGUCGCCAUGUCGCCGAUGAUGAAAUU------UUCAUUGGCGCCAAACGGAAAAAAA--- ..(((((...((.....)-)......((((.......))))..))))).((.(((((((((.......------.))))))))).))............--- ( -24.80) >DroPer_CAF1 6635 77 - 1 GGAGCCAAGAG--AGACC-CAAAAAUAAU---------UUUUGUUGCCAUC-AGAUGAUGAUGAAAUU------UUCAUUGGCGCCAAACAC------ACAC ((.((((((((--((...-(((((.....---------)))))....((((-(.....)))))...))------))).))))).))......------.... ( -19.00) >consensus GCGGCCAAAAGAAAAUCC_CAAAAAUAAUGCGAACAACAUUUGUCGCCAUG_CGCCGAUGAUGAAAUU______UUCAUUGGCGCCAAACGAAA_CAAACGC ..(((.....................((((.......))))............((((((((..............)))))))))))................ (-12.45 = -12.86 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:01 2006