Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,887,882 – 2,888,039 |
Length | 157 |
Max. P | 0.914487 |
Location | 2,887,882 – 2,888,002 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -29.06 |
Consensus MFE | -21.50 |
Energy contribution | -22.17 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.84 |
Structure conservation index | 0.74 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2887882 120 + 27905053 ACACUUACUGUGAUAAUUACGUCAAAUACAGGCCCAUUUACUUCCCAGUUUUCGGAACAUAAUGGCGCAGAUCGGGUCGAAAUCCUCUUAGUUUUUGCAUUUUAACCCGAUUUGUUCUUA .......(((((((......)))....))))(((.(((...((((........))))...))))))(((((((((((..((((.(...........).))))..)))))))))))..... ( -29.50) >DroEre_CAF1 1398 120 + 1 ACACUUACUGUGAUAUUUACGUCAAAUGCUGGCCCAUUUAUUUUCCAGUUUUUGGAAUAUCAUGGCGCAGAUCGGGUCAAAAUCCUCUUAGUUUUCGCCUUUUAACCCGAUUUGUUUUUA .......(((((((((((....((((.(((((............))))).))))))))))))))).(((((((((((.((((.................)))).)))))))))))..... ( -31.53) >DroYak_CAF1 21906 115 + 1 ACA----CUGUGAUAAUUACGUCA-UUGCAUGCCCAUUUAUUUUCCAGUUUUAGGAAUAUCAUGGCGCAGAUCGGGUCAAAAUCAUCCUAAUUUUUGCAUUUCAACCCGAUUUGUUUCUU ...----..(((((......))))-).....(((........((((.......))))......)))(((((((((((..((((((..........)).))))..)))))))))))..... ( -26.14) >consensus ACACUUACUGUGAUAAUUACGUCAAAUGCAGGCCCAUUUAUUUUCCAGUUUUAGGAAUAUCAUGGCGCAGAUCGGGUCAAAAUCCUCUUAGUUUUUGCAUUUUAACCCGAUUUGUUUUUA ..........((((......)))).......(((........((((.......))))......)))(((((((((((..((((...............))))..)))))))))))..... (-21.50 = -22.17 + 0.67)
Location | 2,887,882 – 2,888,002 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -27.40 |
Consensus MFE | -22.33 |
Energy contribution | -23.00 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.08 |
Mean z-score | -1.80 |
Structure conservation index | 0.81 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2887882 120 - 27905053 UAAGAACAAAUCGGGUUAAAAUGCAAAAACUAAGAGGAUUUCGACCCGAUCUGCGCCAUUAUGUUCCGAAAACUGGGAAGUAAAUGGGCCUGUAUUUGACGUAAUUAUCACAGUAAGUGU ((((.(((.(((((((..((((.(...........).))))..)))))))..((.(((((((.(((((.....))))).)).))))))).))).))))..........(((.....))). ( -26.70) >DroEre_CAF1 1398 120 - 1 UAAAAACAAAUCGGGUUAAAAGGCGAAAACUAAGAGGAUUUUGACCCGAUCUGCGCCAUGAUAUUCCAAAAACUGGAAAAUAAAUGGGCCAGCAUUUGACGUAAAUAUCACAGUAAGUGU .........((((((((((((..(...........)..))))))))))))(((.(((...((.(((((.....))))).)).....))))))((((((..((.......))..)))))). ( -29.10) >DroYak_CAF1 21906 115 - 1 AAGAAACAAAUCGGGUUGAAAUGCAAAAAUUAGGAUGAUUUUGACCCGAUCUGCGCCAUGAUAUUCCUAAAACUGGAAAAUAAAUGGGCAUGCAA-UGACGUAAUUAUCACAG----UGU ..((.....(((((((..((((.((..........))))))..))))))).(((.((((....((((.......)))).....))))))).....-...........))....----... ( -26.40) >consensus UAAAAACAAAUCGGGUUAAAAUGCAAAAACUAAGAGGAUUUUGACCCGAUCUGCGCCAUGAUAUUCCAAAAACUGGAAAAUAAAUGGGCCUGCAUUUGACGUAAUUAUCACAGUAAGUGU .....((..(((((((((((((.(...........).)))))))))))))..((.((((....((((.......)))).....))))))...........)).................. (-22.33 = -23.00 + 0.67)
Location | 2,887,922 – 2,888,039 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.63 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -21.96 |
Energy contribution | -22.19 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.14 |
Mean z-score | -2.51 |
Structure conservation index | 0.83 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2887922 117 + 27905053 CUUCCCAGUUUUCGGAACAUAAUGGCGCAGAUCGGGUCGAAAUCCUCUUAGUUUUUGCAUUUUAACCCGAUUUGUUCUUAAAAUUAUCUGUUAAAUUUUGGAACCAA-AGCAUA--AAAA .((((.(((((.((((.......((.(((((((((((..((((.(...........).))))..))))))))))).))........))))..)))))..))))....-......--.... ( -27.16) >DroEre_CAF1 1438 119 + 1 UUUUCCAGUUUUUGGAAUAUCAUGGCGCAGAUCGGGUCAAAAUCCUCUUAGUUUUCGCCUUUUAACCCGAUUUGUUUUUAAAAUUAUCCGUUAAAUUUUGGAACCAA-ACCAUAAACAAA .......((((.(((...........(((((((((((.((((.................)))).)))))))))))((((((((((........))))))))))....-.))).))))... ( -25.63) >DroYak_CAF1 21941 120 + 1 UUUUCCAGUUUUAGGAAUAUCAUGGCGCAGAUCGGGUCAAAAUCAUCCUAAUUUUUGCAUUUCAACCCGAUUUGUUUCUUAAAUUAUCUGUAAAAUUUUGGAACCAAUACCUUACAAAAA ..(((((((((((.(.(((....((.(((((((((((..((((((..........)).))))..))))))))))).))......))).).))))))..)))))................. ( -26.10) >consensus UUUUCCAGUUUUAGGAAUAUCAUGGCGCAGAUCGGGUCAAAAUCCUCUUAGUUUUUGCAUUUUAACCCGAUUUGUUUUUAAAAUUAUCUGUUAAAUUUUGGAACCAA_ACCAUA_AAAAA ..((((((..((((((.......((.(((((((((((..((((...............))))..))))))))))).))........))))...))..))))))................. (-21.96 = -22.19 + 0.23)
Location | 2,887,922 – 2,888,039 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.63 |
Mean single sequence MFE | -26.77 |
Consensus MFE | -19.83 |
Energy contribution | -20.83 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.88 |
Structure conservation index | 0.74 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2887922 117 - 27905053 UUUU--UAUGCU-UUGGUUCCAAAAUUUAACAGAUAAUUUUAAGAACAAAUCGGGUUAAAAUGCAAAAACUAAGAGGAUUUCGACCCGAUCUGCGCCAUUAUGUUCCGAAAACUGGGAAG ....--...((.-...((((.((((((........))))))..))))..(((((((..((((.(...........).))))..)))))))..)).........((((........)))). ( -22.70) >DroEre_CAF1 1438 119 - 1 UUUGUUUAUGGU-UUGGUUCCAAAAUUUAACGGAUAAUUUUAAAAACAAAUCGGGUUAAAAGGCGAAAACUAAGAGGAUUUUGACCCGAUCUGCGCCAUGAUAUUCCAAAAACUGGAAAA .....(((((((-.....(((..........)))............((.((((((((((((..(...........)..)))))))))))).)).)))))))..(((((.....))))).. ( -28.20) >DroYak_CAF1 21941 120 - 1 UUUUUGUAAGGUAUUGGUUCCAAAAUUUUACAGAUAAUUUAAGAAACAAAUCGGGUUGAAAUGCAAAAAUUAGGAUGAUUUUGACCCGAUCUGCGCCAUGAUAUUCCUAAAACUGGAAAA ..((((((((((.(((....))).))))))))))............((.(((((((..((((.((..........))))))..))))))).))..........((((.......)))).. ( -29.40) >consensus UUUUU_UAUGGU_UUGGUUCCAAAAUUUAACAGAUAAUUUUAAAAACAAAUCGGGUUAAAAUGCAAAAACUAAGAGGAUUUUGACCCGAUCUGCGCCAUGAUAUUCCAAAAACUGGAAAA ..............((((...((((((........)))))).....((.(((((((((((((.(...........).))))))))))))).)).)))).....((((.......)))).. (-19.83 = -20.83 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:47 2006