Locus 8508

Sequence ID 3R_DroMel_CAF1
Location 22,711,992 – 22,712,089
Length 97
Max. P 0.518356
window13681

overview

Window 1

Location 22,711,992 – 22,712,089
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 93.51
Mean single sequence MFE -30.78
Consensus MFE -24.60
Energy contribution -25.04
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -1.42
Structure conservation index 0.80
SVM decision value -0.03
SVM RNA-class probability 0.518356
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22711992 97 + 27905053
AUGUAUUUAGAUAGACCAACGUCGAAAGAUACAAGCGGCGUGUAUCUGUGAGUUCGUGUUGCGCUGUGUGUGCUAGUGCUUACAGCCGGGGUCAGAA
.............((((...(((....))).....(((((.....)(((((((.(.....((((.....))))..).))))))))))).)))).... ( -28.40)
>DroSec_CAF1 2293 97 + 1
AUGUAUUUAGAUAGGCCAACGUCGAAAGAUACAAGCGCCCUGUAUCUGUGAGUUCGUGUUGCGCUGUGUGUGCUAGCGCAUACAGACGGGGUCAGAA
.............((((((((.(((((((((((.......))))))).....)))))))).(((((((((((....))))))))).)).)))).... ( -31.60)
>DroSim_CAF1 2273 97 + 1
AUGUAUUUAGAUAGGCCAACGUCGAAAGAUACAAGCGGCCUGUAUCUGUGAGUUCUUGUUGCGCUGUGUGUGCUAGUGCUUACAGCCGAGGUCAGAA
..........(((((((...(((....)))......)))))))..((((((((.((....((((.....)))).)).))))))))............ ( -29.80)
>DroEre_CAF1 3391 97 + 1
AUGUAUUUAGAUAGGCCAACGUCGAAAGAUACAAGCGGCCUGUAUCUGUGAGUUCGUGUUGCUCCGUGUGUGCUGGUGCUCACAGACGGGGUUAGAA
(((.(((((.(((((((...(((....)))......))))))).....))))).)))...(((((((.((((........)))).)))))))..... ( -30.70)
>DroYak_CAF1 2395 97 + 1
AUGUAUUUAGAUAGGCCAACGUCGAAAGAUACAAGCGGCCUGUAUCUGUGAGUUCGUGUUGCUCUGUGUGUGCUAGCGCUCACAGACGCGGUCAGAA
..........(((((((...(((....)))......))))))).((((.....(((((....((((((.(((....))).))))))))))).)))). ( -33.40)
>consensus
AUGUAUUUAGAUAGGCCAACGUCGAAAGAUACAAGCGGCCUGUAUCUGUGAGUUCGUGUUGCGCUGUGUGUGCUAGUGCUUACAGACGGGGUCAGAA
.............((((..((((...(((((((.......)))))))((((((.(.....((((.....))))..).)))))).)))).)))).... (-24.60 = -25.04 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:57 2006