Locus 8507

Sequence ID 3R_DroMel_CAF1
Location 22,710,663 – 22,710,769
Length 106
Max. P 0.541547
window13680

overview

Window 0

Location 22,710,663 – 22,710,769
Length 106
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 91.72
Mean single sequence MFE -32.23
Consensus MFE -29.57
Energy contribution -29.73
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.06
Structure conservation index 0.92
SVM decision value 0.02
SVM RNA-class probability 0.541547
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22710663 106 - 27905053
------UUCAGUUUCUCCCCGUGAUUACGCUUUAAUCUCGUUAUAAUGAGGCAGGAAAAUUGCUUGGCGGAUGUGCCGAGCGUGCCCGAAACGGGAACGGGAAUGGGAACGG
------....((((((.(((((.....(((.....((((((....))))))..........((((((((....)))))))))))((((...)))).)))))...)))))).. ( -36.40)
>DroSec_CAF1 994 95 - 1
------UUCAGUUUCUCCCCGUGAUUACGCUUUAAUCUCGUUAUAAUGAGGCAGGAAAAUUGCUUGGCGGAUGUGCCGAGCGUGCCCGAAACGGGAACGGG-----------
------...........(((((.....(((.....((((((....))))))..........((((((((....)))))))))))((((...)))).)))))----------- ( -30.20)
>DroSim_CAF1 975 95 - 1
------UUCAGUUUCUACCCGUGAUUACGCUUUAAUCUCGUUAUAAUGAGGCAGGAAAAUUGCUUGGCGGAUGUGCCGAGCGUGCCCGAAACGGGAACGGG-----------
------...........(((((.....(((.....((((((....))))))..........((((((((....)))))))))))((((...)))).)))))----------- ( -30.40)
>DroEre_CAF1 2052 95 - 1
------UUCGGUUUCUCCCCGUGAUUACGCUUUAAUCUCGUUAUAAUGAGGCAGGAAAAUUGCUUGGCGGAUGUGCCGAGCGUGCCCGAAACGGGAACGGG-----------
------...........(((((.....(((.....((((((....))))))..........((((((((....)))))))))))((((...)))).)))))----------- ( -30.20)
>DroYak_CAF1 1049 95 - 1
------UUCGGUUUCUCCCCGUGAUUACGCUUUAAUCUCGUUAUAAUGAGGCAGGAAAAUUGCUUGGCGGAUGUGCCGAGCGUGCCCGAAACGGGAACGGG-----------
------...........(((((.....(((.....((((((....))))))..........((((((((....)))))))))))((((...)))).)))))----------- ( -30.20)
>DroAna_CAF1 833 101 - 1
CCGUGCAUCUGUCUUUUGCCGUGAUUACGCUUUAAUCUCGUUAUAAUGAGGCAGGAAAAUUGCUUGGCGGAUGUGCCGAGCGUGCCCGAAACGGGAACGGG-----------
((((((.((((((((.((.((.(((((.....))))).)).))....))))))))......((((((((....)))))))))).((((...)))).)))).----------- ( -36.00)
>consensus
______UUCAGUUUCUCCCCGUGAUUACGCUUUAAUCUCGUUAUAAUGAGGCAGGAAAAUUGCUUGGCGGAUGUGCCGAGCGUGCCCGAAACGGGAACGGG___________
.................(((((.....(((.....((((((....))))))..........((((((((....)))))))))))((((...)))).)))))........... (-29.57 = -29.73 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:56 2006