| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,708,641 – 22,708,736 |
| Length | 95 |
| Max. P | 0.994823 |
| Location | 22,708,641 – 22,708,736 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.73 |
| Mean single sequence MFE | -35.50 |
| Consensus MFE | -13.43 |
| Energy contribution | -12.66 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.38 |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.994823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22708641 95 + 27905053 --GAGGCGUGGGCGGAGGCAUUCGCGAGGGGCUUAUUGUGGGAUUUCUUUUGAUUCCCUAAUU--------CCCACCGCGG-------GAUUUCUCGUGGGCUCGUUUUCAU-------- --(((((....(((((....)))))((((((...((((.((((..((....)).)))))))).--------))).((((((-------(....))))))).))))))))...-------- ( -34.60) >DroPse_CAF1 20359 91 + 1 --GGGGCGUGGGAG-AGGCU-------GGGAUUUUUCUUUCAAUUUCCUU----UCCUUAAUU--------CCCAUUACGG-------GAAUUUCUGUGGGCUUACAUCCGCUCUCCCAA --......((((((-(((..-------((((..((......))..)))).----.))..((((--------(((.....))-------)))))...(((((......)))))))))))). ( -30.10) >DroSec_CAF1 15444 97 + 1 UACAGGCGUGGGCGGAGGCAUUCGAGAGGGGUUUAUUGUGGGAUUUCUUUUGAUUCCCUAAUU--------CCCACCGCGG-------GAUUUCUCGUGGGCUCGUUUUCAU-------- .((..((.((((...(((...(((((((..((((......))))..)))))))...)))....--------))))((((((-------(....)))))))))..))......-------- ( -36.10) >DroSim_CAF1 15379 95 + 1 --GAGGCGUGGGCGGAGGCAUUCGCGAGGGGUUUAUUGUGGGAUUUCUUUUGAUUCCCUAAUU--------CCCACCGCGG-------GAUUUCUCGUGGGCUCGUUUUCAU-------- --(((((....(((((....)))))((((((...((((.((((..((....)).)))))))).--------))).((((((-------(....))))))).))))))))...-------- ( -35.30) >DroAna_CAF1 20071 106 + 1 --CAGGCGUGGGCG-AGGCAUUCC--A-GGCUUUAUUGUGGGAUUUCUUUUGAUUCCCUAAUUCCCUGAUUCCCACCGCGGAAUCAGGGAAUUCUCGUGGGCUCGUCCUCGU-------- --...(((.(((((-((....(((--(-.(.........((((..((....)).)))).((((((((((((((......))))))))))))))..).))))))))))).)))-------- ( -46.80) >DroPer_CAF1 20164 91 + 1 --GGGGCGUGGGAG-AGGCU-------GGGAUUUUUCUUUCAAUUUCCUU----UCCUUAAUU--------CCCAUUACGG-------GAAUUUCUGUGGGCUUAUAUCCGCUCUCCCAA --......((((((-(((..-------((((..((......))..)))).----.))..((((--------(((.....))-------)))))...(((((......)))))))))))). ( -30.10) >consensus __GAGGCGUGGGCG_AGGCAUUCG__AGGGGUUUAUUGUGGGAUUUCUUUUGAUUCCCUAAUU________CCCACCGCGG_______GAAUUCUCGUGGGCUCGUUUUCAU________ ..(((.((((((..............(((((.......................)))))............)))))(((((.............)))))).)))................ (-13.43 = -12.66 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:55 2006