Locus 8505

Sequence ID 3R_DroMel_CAF1
Location 22,707,379 – 22,707,483
Length 104
Max. P 0.830948
window13678

overview

Window 8

Location 22,707,379 – 22,707,483
Length 104
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 88.31
Mean single sequence MFE -25.48
Consensus MFE -19.18
Energy contribution -20.46
Covariance contribution 1.28
Combinations/Pair 1.05
Mean z-score -1.99
Structure conservation index 0.75
SVM decision value 0.71
SVM RNA-class probability 0.830948
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22707379 104 + 27905053
UUUUUCA-AACUACCAUAAACGGUCCGUCUAAAUGGCAAAAAGUCUAUAUAAGCAACCGAAUCGCGCCACUAUCUGUAAUUUUACAUAGCGCGCGCGAGGGAUCG
.......-............(((((((..((.(((((.....).)))).))..).......(((((((.(((..((((....))))))).).)))))).)))))) ( -25.50)
>DroSec_CAF1 14163 104 + 1
UUUUUCA-AACUACCACAAACGGUCCCUCUAAUUGGCAAAAAGUCUAUAUAAGCAACCGAAACGCGCCACUAUCUGUAAUUUUACAUAGCGCGCGCGAGGGAUCG
.......-............(((((((((.....(((.....)))..................(((((.(((..((((....))))))).).))))))))))))) ( -28.30)
>DroSim_CAF1 14113 104 + 1
UUUUUCA-AACUACCACAAACGGUCCCUCUAAUUGUCAAAAAGUCUAUAUAAGCAACCGAAACGCGCCACUAUCUGUAAUUUUACAUAGCGCGCGCGAGGGAUCG
.......-............(((((((((.............((........)).........(((((.(((..((((....))))))).).))))))))))))) ( -26.20)
>DroEre_CAF1 14723 105 + 1
UUUUUUUGAACUCCCGCGAACGGUCACUCUAAUCAGUGCAAAAUCUAUAUAAGCAGCCGAAACGCGCCGCUAUCGUUAGUUUUACAUAUCGCGCGCGAGAGAUCA
......(((.(((.((((..((((((((......)))).((((.(((....(((.((((...)).)).))).....)))))))....))))..)))).))).))) ( -23.80)
>DroYak_CAF1 16438 104 + 1
UUUUUUC-AAAUACCUCAAACGGUCCCUCUAAAUGGCAAAAAGUCUAUAUAAGCAACCGAAACGCGCCACUAUCUGUAAUUUUACAUAGCGCGCGCGAGAGAUCA
.......-......(((...((((..((......(((.....)))......))..))))...((((((.(((..((((....))))))).).))))).))).... ( -23.60)
>consensus
UUUUUCA_AACUACCACAAACGGUCCCUCUAAUUGGCAAAAAGUCUAUAUAAGCAACCGAAACGCGCCACUAUCUGUAAUUUUACAUAGCGCGCGCGAGGGAUCG
.....................((((((((.....(((.....)))..................(((((.((((.((......)).)))).).)))))))))))). (-19.18 = -20.46 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:54 2006