Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,701,968 – 22,702,085 |
Length | 117 |
Max. P | 0.995119 |
Location | 22,701,968 – 22,702,085 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 79.20 |
Mean single sequence MFE | -43.02 |
Consensus MFE | -29.11 |
Energy contribution | -30.80 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.12 |
Mean z-score | -2.67 |
Structure conservation index | 0.68 |
SVM decision value | 2.54 |
SVM RNA-class probability | 0.995119 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22701968 117 + 27905053 ACACAAUCCUCGGAGGAGCAAGAAUCAACCACUAGCGCAGCGCCGGCGGCGGCGGCUCAAAGAGCAGGAAGCCAGUUGGUUGAGUCCAAUUCUUCCGACGAUACACUUUUCUCCGAU .....(((.(((((((((...((.(((((((((.((....(((((....)))))((((...)))).....)).)).))))))).))...))))))))).)))............... ( -42.90) >DroSec_CAF1 8817 117 + 1 ACGGAAUCCUCGGAGGAGCAAGGAUCAACCACCAGCGCAGCGCCAGCAGCGGCUGCUCAAAGAGCAAGAAGCCAGUUGGUGGAGUCCAAUUCUUCCGACGAUACACUUUUCUCCGAU .(((((((.(((((((((...((((...((((((((((.((....)).))((((((((...))))....)))).)))))))).))))..))))))))).))).........)))).. ( -49.80) >DroSim_CAF1 8786 117 + 1 ACGGAAUCCUCGGAGGAGCAAGGAUCAACCACCAGCGCAGCGCCGGCGGCGGCUGCUCAAGGAGCAAGAAGCCAGUUGGUGGAGUCUAAUUCUUCCGACGAUACACUUUUCUCCGAU .(((((((.(((((((((...((((...((((((((...((((((....))))(((((...)))))....))..)))))))).))))..))))))))).))).........)))).. ( -48.00) >DroYak_CAF1 11004 91 + 1 --------CUCGGAGGACCAUGCACCAACCACUAGCGCUGCGGCGGCG---GCAGCUCAAAGAG---------------UGGCAUCCAGUUCAUCCGAUGGUACACUUUUCUCCGAU --------.((((((((...((.((((.(((((((((((((....)))---)).))).....))---------------)))........((....)))))).))...)))))))). ( -31.40) >consensus ACGGAAUCCUCGGAGGAGCAAGGAUCAACCACCAGCGCAGCGCCGGCGGCGGCUGCUCAAAGAGCAAGAAGCCAGUUGGUGGAGUCCAAUUCUUCCGACGAUACACUUUUCUCCGAU .........(((((((((.....(((..(((((((((((((((.....)).))))).......((.....))..)))))))).(((..........)))))).....))))))))). (-29.11 = -30.80 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:53 2006