Locus 8503

Sequence ID 3R_DroMel_CAF1
Location 22,701,657 – 22,701,774
Length 117
Max. P 0.677411
window13676

overview

Window 6

Location 22,701,657 – 22,701,774
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.37
Mean single sequence MFE -44.12
Consensus MFE -33.00
Energy contribution -33.04
Covariance contribution 0.04
Combinations/Pair 1.19
Mean z-score -1.84
Structure conservation index 0.75
SVM decision value 0.30
SVM RNA-class probability 0.677411
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22701657 117 - 27905053
UCAGCAGGUGCGGAUUUCUGAUUACGCGGUACGGGGACCUCAGCGUGUGAUUCCCCAGACCGCACAAGCGGUGCUCCUCAUGG---GGCGAAUCCGACAUUAGAACUUAAGUUGAAUACU
(((((((((.((((((((((.....(((((..(((((..(((.....))).)))))..))))).....))).(((((....))---))))))))))........))))..)))))..... ( -41.20)
>DroSec_CAF1 8506 117 - 1
UCAGCAGGUGCGGAUUCCUGAUUACGCGAUACGGGGACCUCAGCGUGUGAUUUCCCAGGCCGCACAAGCGGUGCUCCUCAUGG---GGCGAAUCCGACAUCAGAACUUAAGUUGAAUACU
(((((.((((((((((((((((((((((....(....).....))))))))....)))(((((....)))))(((((....))---)))))))))).))))(....)...)))))..... ( -43.90)
>DroSim_CAF1 8475 117 - 1
UCAGCAGGUGCGGAUUCCUGAUUACGCGGUACGGGGACCUCAGCGUGUGAUUUCCCAGGCCGCACAAGCGGUGCUCCUCUUGG---GGCGAAUCCGACAUCAGAACUUAAGUUGAAUACU
(((((.((((((((((((((.....(((((...((((..(((.....)))..))))..))))).....))).(((((....))---)))))))))).))))(....)...)))))..... ( -44.30)
>DroEre_CAF1 8906 117 - 1
UCAGCAGGUGCGGAUUCCUGAUUAUGCGGUACGGGGACCUCAGCGUGUGGUUACCCAGGCCGCACAAUCGGUGCUCCUCAUGU---GGCGACUCCGACAUCGGGACUUAAGUUAAAUAGU
......((((((((.((((((((.((((((..(((((((.(.....).)))).)))..)))))).)))))).((..(....).---.)))).)))).))))..(((....)))....... ( -42.20)
>DroYak_CAF1 10694 120 - 1
UCAGCAGAUGCGGAUUCCUGACUAUGCGGUACGGGGACCUCAGCGUGUGAUUCCCCAGGCCGCACAAUCGGUGCUCCUCAUGGGGCGGCGACUCCGACAUCUGAACUUAAAUUAAAUAUU
....((((((((((..........((((((..(((((..(((.....))).)))))..))))))...(((.((((((....)))))).))).)))).))))))................. ( -49.00)
>consensus
UCAGCAGGUGCGGAUUCCUGAUUACGCGGUACGGGGACCUCAGCGUGUGAUUCCCCAGGCCGCACAAGCGGUGCUCCUCAUGG___GGCGAAUCCGACAUCAGAACUUAAGUUGAAUACU
......((((((((((((((.....(((((..(((((..(((.....))).)))))..))))).....))).(((((....))...)))))))))).))))................... (-33.00 = -33.04 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:52 2006