| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,700,544 – 22,700,647 |
| Length | 103 |
| Max. P | 0.917703 |
| Location | 22,700,544 – 22,700,647 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 72.93 |
| Mean single sequence MFE | -28.66 |
| Consensus MFE | -17.32 |
| Energy contribution | -17.35 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.917703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22700544 103 - 27905053 CCACUGGCAAGCGUCGCGGCUUCGCCUUCGUCGAGUUCGACGACUACGAUGCAGUGGAUAAGGCUAUCCGUAAGCAUAA-AAG-CUAAAAUGCUAAAU--AUUAGAU ....(((((.((((((.(((...))).((((((....))))))...))))))...(((((....)))))...(((....-..)-))....)))))...--....... ( -31.60) >DroVir_CAF1 8244 100 - 1 CUACCGGCAAGCGUCGAGGCUUUGCCUUCAUCGAAUUCGAUGACUACGAUGCCGUAGACAAGGCAAUACGUAAGUCUACCUUAAGCCAAUUA----AU--UUAAAC- .....(((..((((((((((...))))((((((....))))))...)))))).((((((...((.....))..)))))).....))).....----..--......- ( -33.00) >DroEre_CAF1 7742 104 - 1 CCACUGGAAAGCGUCGGGGCUUCGCUUUCGUCGAGUUUGACGACUACGAUGCAGUGGAUAAGGCCAUCCGUAAGUAUAG-AAC-CUAAAAUGCAAAAGCGGUAAAA- (((((((((((((.........)))))))((((((((....)))).)))).)))))).....(((...(....).....-...-.......((....)))))....- ( -28.40) >DroWil_CAF1 9376 97 - 1 CCACAGGCAAGCGUCGAGGCUUUGCCUUCAUAGAGUUUGAUGACUACGAUGCCGUAGACAAGGCCAUACGUAAGUAGAA-CAU-U-----UGCAAAAU--GUGAAU- .((((.(((((..((..(((((((...((((........))))(((((....))))).))))))).(((....))))).-..)-)-----)))....)--)))...- ( -29.70) >DroMoj_CAF1 8475 99 - 1 CCACCGGCAAGCGUCGCGGCUUUGCCUUUAUCGAAUUUGAUGACUAUGAUGCCGUAGACAAGGCCAUACGUAAGUGUAG-UGAAGUAAAUUA----AU--AUAUGC- .(((.(((....((((((((.......((((((....)))))).......))))).)))...)))((((....)))).)-))..........----..--......- ( -25.74) >DroAna_CAF1 7774 99 - 1 CCACCGGCAAGCGUCGAGGUUUCGCCUUUAUCGAGUUUGACGACUACGAUGCCGUAGACAAAGCCAUACGUAAGUGGAA-UAU-CUUAACUCCAAUGC--A---UA- .....(((...(((((((..((((.......))))))))))).(((((....))))).....)))....(((..((((.-...-......)))).)))--.---..- ( -23.50) >consensus CCACCGGCAAGCGUCGAGGCUUCGCCUUCAUCGAGUUUGACGACUACGAUGCCGUAGACAAGGCCAUACGUAAGUAUAA_UAA_CUAAAAUGCAAAAU__AUAAAA_ .....(((....(((..(((.(((...((((((....))))))...))).)))...)))...)))((((....)))).............................. (-17.32 = -17.35 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:51 2006