| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,699,845 – 22,699,949 |
| Length | 104 |
| Max. P | 0.916291 |
| Location | 22,699,845 – 22,699,949 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 71.67 |
| Mean single sequence MFE | -42.72 |
| Consensus MFE | -18.60 |
| Energy contribution | -17.89 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.56 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.44 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.916291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22699845 104 + 27905053 UUGUUGUGCUUGGAUGGUCCGCCUCCGUAGUUUUGCUGAUAGCCAGUGCCGAAAUUUGGUUGUGGUGUUGGC---UGUUGCG---AAGA---CUGCUGCUGGUGGGAUGGAGG ........(((.(....((((((..(((((((((((.(((((((((..(((.(((...))).)))..)))))---)))))).---))))---)))).)..)))))).).))). ( -39.70) >DroPse_CAF1 9388 103 + 1 UUGUUGUGCUUGGUAGGACCCCCACCGUAGCUCUGCUGAUAGCCGCUGCCGAAAUUCGGAGGCGG---UUGCUGGUGUGGCG---GUGGACCCUGCGGCAGCGGUGCUC---- ..((..(((((.(((((....(((((((.((...(((..((((((((.(((.....))).)))))---)))..))))).)))---))))..))))).).))))..))..---- ( -45.70) >DroGri_CAF1 7690 107 + 1 UUGCUGUGCUUGGUGGGGCCACCGCCAUAGUUCUGUUGAUAGCCACUGCCAAAGUUUGGCGGCA---CCGGCUGCUGCUGCUGUGGCGG---UGGCGGCUGAUGGGGCGGUGG (..((((.((.(((...((((((((((((((...((.(.(((((.((((((.....))))))..---..)))))).)).))))))))))---)))).)))...)).))))..) ( -54.40) >DroSec_CAF1 6687 107 + 1 UUGUUAUGCUUGGAUGGUCCGCCUCCGUAGUUUUGCUGAUAGCCAGAGCCGAAAUUUGGUUGUGGUGUUGGCUGCUGUUGCU---GAGA---CUGCUGCUGGUGGGAUGGAGG ........(((.(....((((((..(((((((((((..(((.(((.((((((...)))))).))))))..)).((....)).---))))---)))).)..)))))).).))). ( -37.40) >DroSim_CAF1 6643 107 + 1 UUGUUGUGCUUGGAUGGUCCGCCUCCGUAGUUUUGCUGAUAGCCAGAGCCGAAAUUUGGUUGUGGUGUUGGCUGCUGUUGCU---GAGA---CUGCUGCUGGUGGGAUGGAGG ........(((.(....((((((..(((((((((((..(((.(((.((((((...)))))).))))))..)).((....)).---))))---)))).)..)))))).).))). ( -37.40) >DroMoj_CAF1 7785 104 + 1 U---UGUGUUUGGUUGGACCGCCGCCAUAAUUUUGUUGAUAGCCACUACCGAAGUUGGGAG---GCGGCUGCUGCUGCUGCUGUGGUGG---CGGUGGCUGAUGCGGUGGUGG .---.............((((((((((......))....(((((((..(((....(((..(---(((((....)))))).)))...)))---..)))))))..)))))))).. ( -41.70) >consensus UUGUUGUGCUUGGAUGGUCCGCCUCCGUAGUUUUGCUGAUAGCCACUGCCGAAAUUUGGUGGUGGUGUUGGCUGCUGUUGCU___GAGA___CUGCGGCUGGUGGGAUGGAGG .......(((((((.((....)))))).)))...((((...((((.((((((...)))))).))))..))))....((.((.............)).)).............. (-18.60 = -17.89 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:50 2006