Locus 8500

Sequence ID 3R_DroMel_CAF1
Location 22,699,602 – 22,699,702
Length 100
Max. P 0.509497
window13673

overview

Window 3

Location 22,699,602 – 22,699,702
Length 100
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 81.67
Mean single sequence MFE -42.52
Consensus MFE -30.56
Energy contribution -30.48
Covariance contribution -0.08
Combinations/Pair 1.42
Mean z-score -1.24
Structure conservation index 0.72
SVM decision value -0.05
SVM RNA-class probability 0.509497
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22699602 100 + 27905053
CUGUUGGCACUGCCUCCAGUGGCCACGGAGCCAUUGGAUACGCCAACAGCCUUGGCCCCAGUUGGCGGCGGAACGCUUCCAUUAGGCGGCAGUGGUCCAG
....(((((((((((((((((((......)))))))))...(((....((((..((....))..).)))(((.....)))....))))))))))..))). ( -45.70)
>DroGri_CAF1 7439 97 + 1
CUGUUGGCGCUGGCGCCCGUUGCCACCGAACCAUUGGAUACGUUUUUGGGCACGGGUC---CCGACGCUGGCCCAUUGCCACUGGGCGGCGGUGCGGCGG
((((((.(((((.(((((((.((..((((....)))).........(((((.(((((.---...)).))))))))..)).)).))))).))))))))))) ( -43.70)
>DroSec_CAF1 6444 100 + 1
CUGUUGGCACUGCCUCCAGUGGCCACGGAGCCAUUGGAUACGCCCACAGCCUUGGCCCCAGUUGACGGCGGAACGCUUCCAUUAGGCGGCAGUGGCCCAG
(((..((((((((((((((((((......)))))))))...(((....((((..((....))..).)))(((.....)))....))))))))).)))))) ( -46.00)
>DroSim_CAF1 6400 100 + 1
CUGUUGGCACUGCCUCCAGUGGCCACGGAGCCAUUGGAUACGCCCACAGCCUUGGCCCCAGUUGACGGCGGAACGCUUCCAUUAGGCGGCAGUGGCCCAG
(((..((((((((((((((((((......)))))))))...(((....((((..((....))..).)))(((.....)))....))))))))).)))))) ( -46.00)
>DroEre_CAF1 6799 100 + 1
CUAUUGGCACUGCCACCGGUGGCCACGGACCCAUUGGAUACGCCCACCGCCUUGGCACCAGCUGCCGGAGGAACGUUUCCAUUAGGCGGCGGAGCUCCAG
....((((...))))(((((((........)))))))....((((.((((((.((((.....))))(((((....)))))...)))))).)).))..... ( -38.40)
>DroYak_CAF1 8651 100 + 1
CUAUUGGCACUACCUCCCGUGGCCACAGACCCAUUGGAUACGCCCACCGCCUUGGCGCCAGUUGACGGAGGAACGUUUCCAUUAGGCGGCGGUGGUCCAG
....(((.(((((((((.((((........)))).)))...(((....((....))((((((.((((......))))...))).))))))))))))))). ( -35.30)
>consensus
CUGUUGGCACUGCCUCCAGUGGCCACGGAGCCAUUGGAUACGCCCACAGCCUUGGCCCCAGUUGACGGCGGAACGCUUCCAUUAGGCGGCAGUGGUCCAG
....((((((((((.(((((((........)))))))....(((....((((((((....))))).)))(((.....)))....))))))))))..))). (-30.56 = -30.48 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:49 2006