Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,887,221 – 2,887,328 |
Length | 107 |
Max. P | 0.970397 |
Location | 2,887,221 – 2,887,328 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 82.52 |
Mean single sequence MFE | -28.22 |
Consensus MFE | -19.42 |
Energy contribution | -19.20 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.88 |
Structure conservation index | 0.69 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2887221 107 - 27905053 GAUCCUCUUUUUUGCAAGGAUCUUUCUUUUUGCAGGGGUCAACUUUCUUGGGUUUUUUAGCGCAAGGAUCUUUGGGGCAACAGCUUUUUUUCUCGCAAGGAUCUUCU ((((((......((((((((......))))))))))))))......((((.(((....))).))))(((((((((((.((........)).))).)))))))).... ( -29.60) >DroEre_CAF1 611 95 - 1 GAUCCUCUUUUUUGCAAGGAUCUUUUUUCUUGCAGGGGUCGACUUUCUUGGGUUUUUUGGCACAA---------GGGCAACAGCAU---UUCUCGCAAGGAUCUUGU ((((((...(((((((((((......)))))))))))(.(((...(((((.(((....))).)))---------))((....))..---...)))).)))))).... ( -26.50) >DroYak_CAF1 17324 89 - 1 GAUCCUCUUUUUUGCAAGGAUCUUUUUUCUUGCAGGGGUCAACUUUCUUGCGUUUUUUU---------------GGGCAACAGCAU---UUCACGCAAGGAUCUUCU ((((((......((((((((......))))))))))))))....(((((((((......---------------.(....).....---...)))))))))...... ( -28.56) >consensus GAUCCUCUUUUUUGCAAGGAUCUUUUUUCUUGCAGGGGUCAACUUUCUUGGGUUUUUUAGC_CAA_________GGGCAACAGCAU___UUCUCGCAAGGAUCUUCU ((((((..((((((((((((......)))))))))))).....................................(....)................)))))).... (-19.42 = -19.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:43 2006