Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 521,531 – 521,621 |
Length | 90 |
Max. P | 0.639890 |
Location | 521,531 – 521,621 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 86.36 |
Mean single sequence MFE | -22.67 |
Consensus MFE | -20.23 |
Energy contribution | -19.91 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.14 |
Mean z-score | -1.45 |
Structure conservation index | 0.89 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 521531 90 - 27905053 UGUGGUUAUAUAGAGGGAAUAUUUUCUGUCCUGAAGAGCGGAGGGUAAAUUCCUUGUCCUUCCAAUUGUCCUUUUUGUUGCCUUUGGGCC ...(((.(((.(((((((...(((((......)))))..(((((((((.....))).)))))).....)))))))))).)))........ ( -22.60) >DroSec_CAF1 47689 84 - 1 UGUCUUCAUAUUGAGGGAAUAUUCUCUGUUCCGAAGAACGGAGUGUAAAUUCCUCG------CAAUUGUCCUUGUUGUUGUCUUUGGGCC .((((.......((((((.(((.((((((((....)))))))).)))..))))))(------((((.......))))).......)))). ( -22.70) >DroSim_CAF1 47950 84 - 1 UGUCUUUAUAUUGAGGGAAUAUUCUCUGUUCCGAAGAACGGAGUGUAAAUUCCUCG------CAAUUGUCCUUGUUGUUGUCUUUGGGCC .((((.......((((((.(((.((((((((....)))))))).)))..))))))(------((((.......))))).......)))). ( -22.70) >consensus UGUCUUUAUAUUGAGGGAAUAUUCUCUGUUCCGAAGAACGGAGUGUAAAUUCCUCG______CAAUUGUCCUUGUUGUUGUCUUUGGGCC ............((((((.(((.((((((((....)))))))).)))..))))))............((((..............)))). (-20.23 = -19.91 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:39 2006