| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,690,973 – 22,691,074 |
| Length | 101 |
| Max. P | 0.785866 |
| Location | 22,690,973 – 22,691,074 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 79.40 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -15.78 |
| Energy contribution | -16.25 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22690973 101 + 27905053 GCUGUCUUCUU-GCGAUGUGACUUCUCCUCCUCCUCCUCAUCAUCUUCGCUGGCGGAGAUUUUUUCGUCCAGUGAUGAGUUCAAGACUGGCGAAUCAAUUUU ((((((((...-((((((.(................).)))).((.((((((((((((....))))).))))))).))))..))))).)))........... ( -27.39) >DroSec_CAF1 138512 98 + 1 GCUGUCUUCUU-GCGAUAUGACUUGUCCUC---CUCCUCAUCCUCUUCGCUGGCGGAGAUUUCCUCGUCCAGUGAUGAGUUCAAGACUGGCGAAUCAAUUUU ((((((((...-..((((.....))))...---.........(((.(((((((((..(....)..)).))))))).)))...))))).)))........... ( -27.20) >DroSim_CAF1 140061 98 + 1 GCUGUCUUCUU-GCGAUAUGACUUGUCCUC---CUCCUCAUCCUCUUCGCUGGCGGAGAUUUCCUCGUCCAGUGAUGAGUUCAAGACUGGCGAAUCAAUUUU ((((((((...-..((((.....))))...---.........(((.(((((((((..(....)..)).))))))).)))...))))).)))........... ( -27.20) >DroEre_CAF1 149679 98 + 1 GCUGUCUUCUU-GGGGAGUGGUCUAUAUUC---UUCCUCAUCAUCUUCGCUGGCGGAGAUUUCCUCGUCUAGUGACGAGUUCAAGGCUGGCGAAACAUUUUU ((((((((..(-((((((..((....))..---)))))))..(((((((....)))))))...((((((....))))))...))))).)))........... ( -30.40) >DroYak_CAF1 143713 98 + 1 GCAGUCUUCUU-GCGAGGUGGGGUAUCUUC---CUCUUCAUCCUCUUCGCUGGCGGAGAUUUCUUCGUCUAGUGAUGAGUUCAAGACUGGCGAAUCAAUUUU .(((((((...-..((((.((((....)))---).))))...(((.((((((((((((....))))).))))))).)))...)))))))............. ( -35.20) >DroAna_CAF1 140190 97 + 1 CCUGUCUCUUUCGCGGAAGCACUUCUA--A---UUCCUCCUCAUCUUCACUGGCCGAGAUGAUUUCCUCAAUCGAGGAGUUCACCGGCGGAGAGUCCACUUU ...(.((((((.((....)).......--.---...................((((.(.(((.((((((....)))))).)))))))))))))).)...... ( -28.40) >consensus GCUGUCUUCUU_GCGAUAUGACUUAUCCUC___CUCCUCAUCAUCUUCGCUGGCGGAGAUUUCCUCGUCCAGUGAUGAGUUCAAGACUGGCGAAUCAAUUUU ((((((((...................................((((((....))))))....((((((....))))))...))))).)))........... (-15.78 = -16.25 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:44 2006