| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,689,185 – 22,689,303 |
| Length | 118 |
| Max. P | 0.759649 |
| Location | 22,689,185 – 22,689,303 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.44 |
| Mean single sequence MFE | -41.77 |
| Consensus MFE | -18.72 |
| Energy contribution | -18.70 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.759649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22689185 118 - 27905053 GCAGUUCGGCCGCCGAGGUGGGAUUACUCGAGUGCAGCAACUUGAUGGCCUUCUUCAGCACGGGAUCCACUUCUUGGGCAGCUGCAGCAGCGGCGGCUAUAUUUGCGGCCAUCUUAA-U ((((...(((((((((((.(((.(((.((((((......)))))))))))).)))).((.(((((......))))).)).((((...)))))))))))....))))...........-. ( -44.40) >DroVir_CAF1 180142 118 - 1 GAAGUUCGGCUGCAGAAGUUGGAUUAGAUGAAUGUAGCAAUUUAAUUGCCUUUUUCAGCACAGGAUCUACUUCUUGAGCAGCAGCGGCUGCUGCGGCAAUAUUUGCGGCCAUUUUUU-C .......(((((((((.((((.(((.....))).))))......((((((.......((.(((((......))))).)).(((((....))))))))))).))))))))).......-. ( -43.40) >DroGri_CAF1 241377 119 - 1 GAAGCUCCGACGCCGAGCUUGCAUUUGUUGAAUGCAACAAUUUGAUUGCCUUCUUCAGUACAGGAUCAACUUCCUGGGUAGCAGCGGCGGCUGCCACAAUAUUUGCAGCCAUUGUUUAU .((((......((((.(((.((..(((..(((.(((((.....).)))).)))..)))..(((((......))))).)))))..))))((((((..........))))))...)))).. ( -36.10) >DroWil_CAF1 257300 118 - 1 GCAGCUCGGAGGCAGAUGUCGAAUUGCUAGAAUGCAAUAAUUUGACGGCCUUUUUAAGCACAGGAUCAACUUCUUGAGCUGCUGCGGCAGCCGCAGCGAUGUUGGCAGCCAUUUAUG-A (((((..((((((....((((((((((......)))...))))))).))))))...(((.(((((......))))).))))))))(((.((((((....)).)))).))).......-. ( -45.30) >DroMoj_CAF1 170922 118 - 1 GAAGCUCCGCUGCAGACGUAGGAUUCGUUGAAUGCAACAGUUUGAUUGCCUUUUUGAGCACAGGAUCUACUUCCUGUGAAGCAGCAGCUGCUGCAGCAAUAUUGGCAGCCAUUUUAA-U ........(((((((((((.(.((((...)))).).)).)))).(((((.........(((((((......)))))))..(((((....))))).)))))....)))))........-. ( -38.00) >DroPer_CAF1 158061 118 - 1 GGAGUUCGGAUGCAGACGUCGAAUUGCUGGAAUGCAGCAGUUUGAUGGCCUUCUUCAGCACAGGAUCGACUUCCUGGGGCACCGCAACAGCCGCGGCAAUAUUGGCAGCCAUCGCAA-G ........(((((...(((((((((((((.....)))))))))))))(((.......((.(((((......)))))..)).((((.......)))).......))).).))))....-. ( -43.40) >consensus GAAGCUCGGAUGCAGACGUCGGAUUACUUGAAUGCAACAAUUUGAUGGCCUUCUUCAGCACAGGAUCAACUUCCUGGGCAGCAGCAGCAGCUGCGGCAAUAUUGGCAGCCAUUUUAA_U .......((.(((..............((((((......))))))............((.(((((......)))))....(((((....))))).)).......))).))......... (-18.72 = -18.70 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:44 2006