Locus 8495

Sequence ID 3R_DroMel_CAF1
Location 22,685,461 – 22,685,562
Length 101
Max. P 0.951565
window13666

overview

Window 6

Location 22,685,461 – 22,685,562
Length 101
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 69.57
Mean single sequence MFE -31.37
Consensus MFE -14.48
Energy contribution -14.98
Covariance contribution 0.50
Combinations/Pair 1.23
Mean z-score -2.04
Structure conservation index 0.46
SVM decision value 1.41
SVM RNA-class probability 0.951565
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22685461 101 - 27905053
-CAAGGAUGUGUAUCUGGGCGCUCGCACUGGGUGGUGUCCUGCAUUCGUAGUUGGCUGCAGACGCAUAUCCGUU-GGCGCGUCCUUUUCGGUUGGCUGGCUCG
-...(((((((..(((((((((.(((.....))))))))).......((((....)))))))..)))))))((.-.((.((.((.....)).))))..))... ( -40.50)
>DroPse_CAF1 149443 76 - 1
-UCAGGCAGUGUGUCGG-------------UGUGUUGUCCUGCAUUCAUAGUUGACUGCAGACGCAUAUC-------------CUUUUUGGUUCGCUGGCUCU
-..((.(((((..((((-------------(((((.(((.((((.(((....))).))))))))))))))-------------......))..))))).)).. ( -25.10)
>DroEre_CAF1 143888 98 - 1
-CAAGGAUGUGUAUCUGGGUGUUCGCUCUGGG---UGUCCUGCAUUCGUAGUUGACUGCAGACGCAUAUCCGUU-GGCGCGUCCUUUUCGGUUGGCUGCCUCA
-.((((((((((...(((((((.((.((((.(---.(((((((....))))..)))).)))))).)))))))..-.))))))))))...(((.....)))... ( -36.90)
>DroWil_CAF1 251789 80 - 1
CUGUGGGUGUGUAUUU-----------------GUUGUUCUGCAUUCAUAGUUGACUGCAAACGCAUAUCCGUUUGCCGUGUCCUUUUUGG------GGUCAU
((((((((((......-----------------........)))))))))).((((((((((((......))))))).....((.....))------))))). ( -23.24)
>DroYak_CAF1 137906 98 - 1
-CAAGGAUGUGUAUCUGGGUGUUCGCACUGGG---UGUCCUGCAUUCGUAGUUGACUGCAGACGCAUAUCCGUU-GGCGCGUCCUUUUCGGUUGGCUGGCUCU
-...((((((((..((.((((....)))).))---.(((.((((.(((....))).)))))))))))))))((.-.((.((.((.....)).))))..))... ( -37.40)
>DroPer_CAF1 154736 76 - 1
-UCAGGCAGUGUGUCGG-------------UGUGUUGUCCUGCAUUCAUAGUUGACUGCAGACGCAUAUC-------------CUUUUUGGUUCGCUGGCUCU
-..((.(((((..((((-------------(((((.(((.((((.(((....))).))))))))))))))-------------......))..))))).)).. ( -25.10)
>consensus
_CAAGGAUGUGUAUCUG_____________GG_GUUGUCCUGCAUUCAUAGUUGACUGCAGACGCAUAUCCGUU_GGCGCGUCCUUUUCGGUUGGCUGGCUCU
....((((((((..((.((........)).))....(((.((((.(((....))).)))))))))))))))................................ (-14.48 = -14.98 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:42 2006