| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,680,764 – 22,680,856 |
| Length | 92 |
| Max. P | 0.887321 |
| Location | 22,680,764 – 22,680,856 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 79.52 |
| Mean single sequence MFE | -13.77 |
| Consensus MFE | -10.34 |
| Energy contribution | -9.98 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22680764 92 - 27905053 AAAUUGCGGUGCCAUUCAUGCAUUAAAUAUGCAGCAAUCUAAUUGCUAAGCCUCACCCACCCACAACCCACUAGCCAGAAGAA-AAAAAAGAA ....((.((((........((((.....))))((((((...))))))..........))))))....................-......... ( -12.90) >DroSec_CAF1 128403 90 - 1 AAAUUGCGGUGCCAUUCAUGCAUUAAAUAUGCAGCAAUCUAAUUGCUAAGUCUCACCCACCCACAACCCACUAGCUAAAAGAA-AAAAA--AA ....((.((((........((((.....))))((((((...))))))..........))))))....................-.....--.. ( -12.90) >DroEre_CAF1 138575 82 - 1 AAAUUGCGGUGCCAUUCAUGCAUUAAAUAUGCAGCAAUCUAAUUGCUAAGCUUCAC----CCACAACCCACUAGCCAAGAGGA-A------AA ....((.((((........((((.....))))((((((...))))))......)))----)))....((.((.....)).)).-.------.. ( -14.00) >DroWil_CAF1 245383 86 - 1 AAAUUGUGGCGCCAUUCAUGCAUUAAAUAUGCAGCAAUCUAAUUGCUAAGCUCCACUC--CAAG-UCCCAUU--CCACAUAUACAUACA--UG .....((((.((.......((((.....))))((((((...))))))..)).))))..--....-.......--...............--.. ( -16.00) >DroYak_CAF1 133048 82 - 1 AAAUUGCGGUGCCAUUCAUGCAUUAAAUAUGCAGCAAUCUAAUUGCUAAGCUUCCC----CAACAACCCACUAGCCAAGUGAA-A------AA ...(((.((.((.......((((.....))))((((((...))))))..))..)).----))).....((((.....))))..-.------.. ( -14.80) >DroAna_CAF1 130496 74 - 1 AAAUUGUGGCGCCAUUCAUGCAUUAAAUAUGCAGCAAUCUAAUUGCUAAGCUCCUC----UCACAUCCCA-------AAAGUA--------AA .....(.((.((.......((((.....))))((((((...))))))..)).)).)----..........-------......--------.. ( -12.00) >consensus AAAUUGCGGUGCCAUUCAUGCAUUAAAUAUGCAGCAAUCUAAUUGCUAAGCUUCAC____CCACAACCCACUAGCCAAAAGAA_A______AA .......((.((.......((((.....))))((((((...))))))..)).))....................................... (-10.34 = -9.98 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:40 2006