Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,674,041 – 22,674,142 |
Length | 101 |
Max. P | 0.733506 |
Location | 22,674,041 – 22,674,142 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 76.36 |
Mean single sequence MFE | -26.45 |
Consensus MFE | -15.31 |
Energy contribution | -15.98 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.20 |
Mean z-score | -1.64 |
Structure conservation index | 0.58 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22674041 101 - 27905053 UU---GUGUGAAAACGUAGGAAUCGCAUUAGAUUUGGCGUACAGCCCAAUGCACUUUU--CGUGCCGGGCACUUCUUGCUGCUCCUCCAUCACAGCACCACUCCAG ..---(((.(((.((((..(((((......))))).))))...((((...((((....--.)))).))))..))).(((((...........))))).)))..... ( -27.00) >DroSec_CAF1 121650 101 - 1 UU---GUGUGAAAACGUAGGAAUCGCAUUAGAUUUGGCGUACAGCCCAAUGCACUUUU--CGUGCCGGGCACUUCUUGCUGCUUCACCAUCACAGCACCAUUUCAC ..---..((((((((((..(((((......))))).))))...((((...((((....--.)))).))))......(((((...........)))))...)))))) ( -29.00) >DroSim_CAF1 123076 101 - 1 UU---GUGUGAAAACGUAGGAAUCGCAUUAGAUUUGGCGUACAGCCCAAUGCACUUUU--CGUGCCGGGCACUUCUUGCUGCUUCACCAUCACAGCACCAUUUCAC ..---..((((((((((..(((((......))))).))))...((((...((((....--.)))).))))......(((((...........)))))...)))))) ( -29.00) >DroEre_CAF1 131861 99 - 1 UU---GUGUGAAAACGUAGGAAUCGCAUUAGAUUUGGCGUACAGCCCAAUGCACUUUC--CGUGCUGGGCACUUCUUGCUGCACCACCAGCAC--CAUCACACUAU ..---((((((..((((..(((((......))))).))))...(((((..((((....--.)))))))))......(((((......))))).--..))))))... ( -35.00) >DroYak_CAF1 126203 87 - 1 UU---GUGUGAAAACGUAGCAAUCGUAUUAGAUUUGGCAUACAGCCCAAUGCACUUUC--CGUGCCGGGCACUUCUUGCAACAC--------------CCCACCAU ((---(((.(((...(((((.(((......)))...)).))).((((...((((....--.)))).))))..))).)))))...--------------........ ( -21.10) >DroPer_CAF1 141275 89 - 1 UUUGCCUGUGAAAAUAGGAAAAUCGCAUUAGAAUUGGCGCACAGCCCAAUGCACUUUCUUCGCGCUUAUCCCUUCGCUCCGCUGC-----------------CCUG ...((..(((((....(((.((.(((...((((..((.(((........))).))))))..))).)).))).)))))...))...-----------------.... ( -17.60) >consensus UU___GUGUGAAAACGUAGGAAUCGCAUUAGAUUUGGCGUACAGCCCAAUGCACUUUC__CGUGCCGGGCACUUCUUGCUGCUCCACCAUCAC__CACCACUCCAC .......((....))(((((((.(((..........)))....((((...((((.......)))).))))..)))))))........................... (-15.31 = -15.98 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:39 2006