Locus 8491

Sequence ID 3R_DroMel_CAF1
Location 22,670,313 – 22,670,413
Length 100
Max. P 0.940320
window13661

overview

Window 1

Location 22,670,313 – 22,670,413
Length 100
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 86.15
Mean single sequence MFE -24.28
Consensus MFE -17.44
Energy contribution -17.84
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.57
Structure conservation index 0.72
SVM decision value 1.31
SVM RNA-class probability 0.940320
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22670313 100 - 27905053
UAAAACUUGUUUUUUUAAACAGCAGUCAGUAGAAAUACGAU------UUCGUUUGCAGUGUAAGUGUGCAUUUAUAGCAAACUGUAUAUAUGCACAACGAAGGACA
......((((((....))))))..(((.(((....)))..(------((((((((((((((((((.(((.......))).))).))))).)))).)))))))))). ( -25.90)
>DroSec_CAF1 117845 105 - 1
UAAAACUUGUUG-UUUAAAUAGAUGACUCUAGAAAUACGAUUUCGAUUUCGUUUGCAGUGUAUGUGUGCAUUUAUAGCUAACUGUAUAUAUGCACAACGAAGGACA
.......((((.-(((...((((....))))(((((.((....))))))).......(((((((((((((.(((....))).)))))))))))))...))).)))) ( -25.60)
>DroSim_CAF1 119285 99 - 1
UAAAACUUGUUG-UUUAAAUAGCUGACUCUAGAAAUACGAU------UUCGUUUGCAGUGUAUGUGUGCAUUUAUAGCUAACUGUAUAUAUGCACAACGAAGGACA
.......((((.-(((.....((.(((....(((((...))------)))))).)).(((((((((((((.(((....))).)))))))))))))...))).)))) ( -23.40)
>DroEre_CAF1 128053 91 - 1
UAAAACUUGUUG-UUUAAACAGCAGACAUU-------AGAU------UUCAUUUGCAGUGUAUGUGUGCAUUUAUAGCAAAC-GUAUAUAUGCACAACGAAGGACA
......((((((-(....))))))).....-------....------.((.((((..((((((((((((.(((.....))).-))))))))))))..)))).)).. ( -21.80)
>DroYak_CAF1 122432 96 - 1
UAAAACUUG----UUUAAAUAUCCGACUUUAGAAAUAAGAU------UUCAUUUGCAGUGUAUGUGUGCAUUUAUAGCAAACUGUAUAUAUGCACAGCGAAGGACA
.....((((----(((...((........)).)))))))..------.((.(((((.(((((((((((((.((......)).))))))))))))).))))).)).. ( -24.70)
>consensus
UAAAACUUGUUG_UUUAAAUAGCAGACUCUAGAAAUACGAU______UUCGUUUGCAGUGUAUGUGUGCAUUUAUAGCAAACUGUAUAUAUGCACAACGAAGGACA
................................................((.((((..(((((((((((((.((......)).)))))))))))))..)))).)).. (-17.44 = -17.84 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:38 2006