Locus 8490

Sequence ID 3R_DroMel_CAF1
Location 22,654,985 – 22,655,094
Length 109
Max. P 0.856209
window13660

overview

Window 0

Location 22,654,985 – 22,655,094
Length 109
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 79.60
Mean single sequence MFE -28.18
Consensus MFE -13.44
Energy contribution -14.55
Covariance contribution 1.11
Combinations/Pair 1.13
Mean z-score -2.65
Structure conservation index 0.48
SVM decision value 0.81
SVM RNA-class probability 0.856209
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22654985 109 - 27905053
CGUGGCCUUUUGGUUU-CAAAUGAAAAUGAAAAUGAAAAGCUGAAAUCUUGUCAUAAAAAUGCGCGAAUUCGUAAAGUGCACUUUAUGCGCAACGUUUGUGACCAACAC--------U
.(((.......(((((-((..(....((....))....)..)))))))..((((((((..((((((....)((((((....)))))))))))...))))))))...)))--------. ( -28.30)
>DroPse_CAF1 114231 111 - 1
GCUGGCCUUUUGGUUCACAAAUGAA-------AUGAAAUGCUGAAAUCUUGUCAUAAAAAUGCGAGAAUUCGUAAAGUGCACUUUAUGCGCUACAUUUGUGACCACCCUGCCACCAGU
(.((((....((((.((((((((..-------......(((.(((.(((((.(((....)))))))).)))))).((((((.....)))))).))))))))))))....)))).)... ( -36.70)
>DroSec_CAF1 102966 103 - 1
AGUGGCCUUUUGGUUU-CAAAUGAAA------AUGAAAAGCUGAAAUCUUGUCAUAAAAAUGCUCGAAUUCGUAAAGUGCACUUUAUGCGCAACGUUUGUGACCAACAC--------U
((((.....((((((.-((((((...------..........(((.((..(.(((....))))..)).))).....(((((.....)))))..)))))).)))))))))--------) ( -22.50)
>DroWil_CAF1 205677 91 - 1
------UUGUUGCCUU-CAA------------AUGAAAUGCUGAAAUCUCCUCAUAAAAAUGCGCAAAUUCGUAAAGUGCACUUUAUACGCAACGUUUGUGCCCAACAU--------A
------.(((((....-(((------------(((...((((((.......)))..(((.(((((...........))))).)))....))).))))))....))))).--------. ( -15.90)
>DroAna_CAF1 104093 97 - 1
CGUGGUCUUUUGGUUU-CAAAC------------GAAAAGCUGAAAUCUUGUCAUAAAAAUGCGCGAAUUCGUAAAGUGCACUUUACGCGCAACGUUUGUGACCAACGC--------U
.(((.......(((((-((...------------.......)))))))..((((((((..((((((....)((((((....)))))))))))...))))))))...)))--------. ( -29.00)
>DroPer_CAF1 119539 111 - 1
GCUGGCCUUUUGGUUCACAAAUGAA-------AUGAAAUGCUGAAAUCUUGUCAUAAAAAUGCGAGAAUUCGUAAAGUGCACUUUAUGCGCUACAUUUGUGACCACCCUGCCACCACU
(.((((....((((.((((((((..-------......(((.(((.(((((.(((....)))))))).)))))).((((((.....)))))).))))))))))))....)))).)... ( -36.70)
>consensus
CGUGGCCUUUUGGUUU_CAAAUGAA_______AUGAAAAGCUGAAAUCUUGUCAUAAAAAUGCGCGAAUUCGUAAAGUGCACUUUAUGCGCAACGUUUGUGACCAACAC________U
...((((....))))...................................((((((((..((((......(((((((....)))))))))))...))))))))............... (-13.44 = -14.55 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:37 2006