Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,884,886 – 2,885,045 |
Length | 159 |
Max. P | 0.924691 |
Location | 2,884,886 – 2,885,005 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 93.00 |
Mean single sequence MFE | -27.23 |
Consensus MFE | -24.59 |
Energy contribution | -24.70 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.61 |
Structure conservation index | 0.90 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2884886 119 + 27905053 AUUAAGUUCUUUUGGAUCUAAGAGUUUCGUGGGAGACGAUAAAUUUCUCAUUAGAUUGAUUUUGAUCUGAUGAUCUGAGAUAAUAAUGUCAGUUAAACUUGUAUAGUUUUGGGGGCAGG .....(((.(((..((((...(((.((..(.(....).)..))...)))((((((((......))))))))))))..))).)))..((((....(((((.....)))))....)))).. ( -28.10) >DroSec_CAF1 6558 111 + 1 AUUAAGUUCUUUUGGA--------UUUCUUGGGAGACGAAAAAUUUCUCAUUAGAUUGAUUUUGAUCUGAUGAUCUGAGAUAAUAAUGUCAGUUGAACUUGUAUAGUUUUGGGGGCAGG ..(((((((..((((.--------..(((..((....(((....)))((((((((((......))))))))))))..)))........))))..))))))).................. ( -24.50) >DroSim_CAF1 5336 119 + 1 AUUAAGUUCUUUUGGAUCCAAGAGUUUCUUGGGAGACGAUAAAUUUCUCAUUAGAUUGAUUUUGAUCUGAUGAUCUGAGAUAAUAAUGUCAGUUGAACUUGUAAAGUUUUGGGGGCAGG ..(((((((..((((.((((((.....)))))).........(((((((((((((((......))))))))))...))))).......))))..))))))).................. ( -29.10) >consensus AUUAAGUUCUUUUGGAUC_AAGAGUUUCUUGGGAGACGAUAAAUUUCUCAUUAGAUUGAUUUUGAUCUGAUGAUCUGAGAUAAUAAUGUCAGUUGAACUUGUAUAGUUUUGGGGGCAGG .....(((.(((..((.......(((((....)))))..........((((((((((......))))))))))))..))).)))..((((....(((((.....)))))....)))).. (-24.59 = -24.70 + 0.11)
Location | 2,884,886 – 2,885,005 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 93.00 |
Mean single sequence MFE | -15.94 |
Consensus MFE | -13.19 |
Energy contribution | -12.97 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.35 |
Structure conservation index | 0.83 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2884886 119 - 27905053 CCUGCCCCCAAAACUAUACAAGUUUAACUGACAUUAUUAUCUCAGAUCAUCAGAUCAAAAUCAAUCUAAUGAGAAAUUUAUCGUCUCCCACGAAACUCUUAGAUCCAAAAGAACUUAAU ...................((((((...................((((....)))).......((((((.(((.......((((.....))))..)))))))))......))))))... ( -13.90) >DroSec_CAF1 6558 111 - 1 CCUGCCCCCAAAACUAUACAAGUUCAACUGACAUUAUUAUCUCAGAUCAUCAGAUCAAAAUCAAUCUAAUGAGAAAUUUUUCGUCUCCCAAGAAA--------UCCAAAAGAACUUAAU ...................((((((..((((.((....)).)))).((((.((((........)))).)))).......................--------.......))))))... ( -13.80) >DroSim_CAF1 5336 119 - 1 CCUGCCCCCAAAACUUUACAAGUUCAACUGACAUUAUUAUCUCAGAUCAUCAGAUCAAAAUCAAUCUAAUGAGAAAUUUAUCGUCUCCCAAGAAACUCUUGGAUCCAAAAGAACUUAAU ...................((((((....(((..((...(((((((((....)))).............)))))....))..)))..(((((.....)))))........))))))... ( -20.11) >consensus CCUGCCCCCAAAACUAUACAAGUUCAACUGACAUUAUUAUCUCAGAUCAUCAGAUCAAAAUCAAUCUAAUGAGAAAUUUAUCGUCUCCCAAGAAACUCUU_GAUCCAAAAGAACUUAAU ...................((((((..((((.((....)).)))).((((.((((........)))).))))......................................))))))... (-13.19 = -12.97 + -0.22)
Location | 2,884,925 – 2,885,045 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.72 |
Mean single sequence MFE | -29.27 |
Consensus MFE | -25.34 |
Energy contribution | -25.65 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.19 |
Mean z-score | -1.98 |
Structure conservation index | 0.87 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2884925 120 + 27905053 UAAAUUUCUCAUUAGAUUGAUUUUGAUCUGAUGAUCUGAGAUAAUAAUGUCAGUUAAACUUGUAUAGUUUUGGGGGCAGGUUAGAUCUCAGAUUCAGUUUAGAUCCUGAUUCCACAGACA ........((((((((((......))))))))))((((((((.....((((....(((((.....)))))....))))......)))))))).((((........))))........... ( -31.50) >DroSec_CAF1 6589 120 + 1 AAAAUUUCUCAUUAGAUUGAUUUUGAUCUGAUGAUCUGAGAUAAUAAUGUCAGUUGAACUUGUAUAGUUUUGGGGGCAGGUUAGAUCUCAGAUUCAGUUUAGAUCCUGAUUCCACAGACA ........((((((((((......))))))))))((((((((.....((((....(((((.....)))))....))))......)))))))).((((........))))........... ( -31.90) >DroSim_CAF1 5375 120 + 1 UAAAUUUCUCAUUAGAUUGAUUUUGAUCUGAUGAUCUGAGAUAAUAAUGUCAGUUGAACUUGUAAAGUUUUGGGGGCAGGUUAGAUCUCAGAUUCAGUUUAGAUUCUGAUUCCACAGACA ((((((..((((((((((......))))))))))((((((((.....((((....(((((.....)))))....))))......))))))))...))))))...((((......)))).. ( -32.30) >DroEre_CAF1 6612 120 + 1 UAAAUUUCUUAUUAGAUUUAUUUUAAACAUGUUAUCUGAGAUAAUAAUGUCAGUAAAACUUGUAAAAUUUUGGAAACGGGGUACAUCUCGGAUUCAGUUCAGGUCCUGAUUCCACAGACG (((((((......)))))))......(((.(((..((((.((....)).))))...))).)))...((((((....)))))).......(((.((((........)))).)))....... ( -21.40) >consensus UAAAUUUCUCAUUAGAUUGAUUUUGAUCUGAUGAUCUGAGAUAAUAAUGUCAGUUAAACUUGUAAAGUUUUGGGGGCAGGUUAGAUCUCAGAUUCAGUUUAGAUCCUGAUUCCACAGACA ........((((((((((......))))))))))((((((((.....((((....(((((.....)))))....))))......)))))))).((((........))))........... (-25.34 = -25.65 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:42 2006