Locus 8487

Sequence ID 3R_DroMel_CAF1
Location 22,643,934 – 22,644,037
Length 103
Max. P 0.628975
window13656

overview

Window 6

Location 22,643,934 – 22,644,037
Length 103
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 88.27
Mean single sequence MFE -31.94
Consensus MFE -22.37
Energy contribution -22.21
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -1.96
Structure conservation index 0.70
SVM decision value 0.20
SVM RNA-class probability 0.628975
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22643934 103 + 27905053
GCCACAAAAGCCACUAAAUGUUGCCUAAGCCAUUUCCACGGUGGACAGUGGCGUAGGUUUGGGUUU-U--GCCGGAGGUUCAAACUCAAUAUUUACCAAAUUACGC-
(((((.....((((((((((..((....)))))))....)))))...)))))((((((((((((((-.--(((...)))..)))))))).))))))..........- ( -28.30)
>DroSec_CAF1 91862 103 + 1
GCCACAAAAGCCACUAAAUGUUGCCUAAGCUAUUUUCACGGUGGCCAGUGGCGUAGGUUCGGGUUU-U--ACAGGAGGUUCAACCUCAAUAUUUACCAAAUUACGC-
(((((....(((((((((((((.....))).))))....))))))..)))))((((.....(((..-.--....((((.....)))).......)))...))))..- ( -30.44)
>DroSim_CAF1 93681 103 + 1
GCCACAAAAGCCACUAAAUGUUGCCUAAGCUAUUUUCACGGUGGCCAGUGGCGUAGGUUCGGGUUU-U--ACAGGAGGUUCAACCUCAAUAUUUACCAAAUUACGC-
(((((....(((((((((((((.....))).))))....))))))..)))))((((.....(((..-.--....((((.....)))).......)))...))))..- ( -30.44)
>DroEre_CAF1 100019 106 + 1
GCCACAAAAGCCACUAAAUGUUGCCUAAGCAAUUGUUUCGGUGGACAGUGGCGUGGGUUGAGCUUCAUAGGGGGGAGGUUCAACCUCAAUAUUUACCAAAUUACGC-
(((((.....((((..((.(((((....)))))...))..))))...))))).(((((((((((((........))))))))))).))..................- ( -37.60)
>DroYak_CAF1 95664 105 + 1
GCCACAAAAGCCACUAAAUGUUGCCUAAGCAAUUGCCUCGGUGGACAGUGGCGUGGGUGGGGGUUUUU--GCCAGUGGUUCAACCACAAUAUUUACCAAAUUACUCC
(((((.....(((((....(((((....)))))......)))))...)))))...(((((((((....--))).((((.....))))....)))))).......... ( -32.90)
>consensus
GCCACAAAAGCCACUAAAUGUUGCCUAAGCAAUUUUCACGGUGGACAGUGGCGUAGGUUCGGGUUU_U__GCAGGAGGUUCAACCUCAAUAUUUACCAAAUUACGC_
(((((.....(((((....((.((....)).))......)))))...)))))((((.....(((..........((((.....)))).......)))...))))... (-22.37 = -22.21 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:33 2006