Locus 8486

Sequence ID	3R_DroMel_CAF1
Location	22,643,211 – 22,643,301
Length	90
Max. P	0.995263

overview

Window 5

Location	22,643,211 – 22,643,301
Length	90
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	96.36
Mean single sequence MFE	-24.40
Consensus MFE	-20.44
Energy contribution	-20.12
Covariance contribution	-0.32
Combinations/Pair	1.09
Mean z-score	-2.79
Structure conservation index	0.84
SVM decision value	2.56
SVM RNA-class probability	0.995263
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22643211 90 - 27905053
GUUAAGCAGCAUUACGGCAUU--GUCGGCUGGCACAUUAAUUUAUUUACAGGCAACAUUAAGCACUGUCUAUAGGUUAAUUAAAAUUAUUGA
......((((....((((...--))))))))....((((((((((..((((((........)).))))..))))))))))............ ( -18.80)
>DroSec_CAF1 91159 90 - 1
GUUAAGCGGCAUUACGGCAUU--GCCGCCUGGCACAUUAAUUUAUUUACAGGCAACAUUAAGCACUGUCUAUAGGUUAAUUAAAAUUAUUGA
((((.((((((.........)--))))).))))..((((((((((..((((((........)).))))..))))))))))............ ( -26.50)
>DroSim_CAF1 92978 90 - 1
GUUAAGCGGCAUUACGGCAUU--GCCGCCUGGCACAUUAAUUUAUUUACAGGCAACAUUAAGCACUGUCUAUAGGUUAAUUAAAAUUAUUGA
((((.((((((.........)--))))).))))..((((((((((..((((((........)).))))..))))))))))............ ( -26.50)
>DroEre_CAF1 99315 89 - 1
GUUAAGCGGCAUUACGGCAUU--GCCGCCUGGCACAUUAAUUUAUUUACAGGC-ACAUUAAGCACUGUCUAUGGGUUAAUUAAAAUUAUUGA
((((.((((((.........)--))))).))))..((((((((((..((((((-.......)).))))..))))))))))............ ( -25.80)
>DroYak_CAF1 94935 91 - 1
GUUAAGCGGCAUUACGGCAUUGUGCCGACUGGCACAUUAAUUUAUUUACAGGC-ACAUUAAGCACUGUCUAUAGGUUAAUUAAAAUUAUUGA
((((..((((((.........))))))..))))..((((((((((..((((((-.......)).))))..))))))))))............ ( -24.40)
>consensus
GUUAAGCGGCAUUACGGCAUU__GCCGCCUGGCACAUUAAUUUAUUUACAGGCAACAUUAAGCACUGUCUAUAGGUUAAUUAAAAUUAUUGA
........((....((((.....))))....))..((((((((((..((((((........)).))))..))))))))))............ (-20.44 = -20.12 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:32 2006