Locus 8484

Sequence ID 3R_DroMel_CAF1
Location 22,635,746 – 22,635,837
Length 91
Max. P 0.595728
window13652

overview

Window 2

Location 22,635,746 – 22,635,837
Length 91
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 87.45
Mean single sequence MFE -22.63
Consensus MFE -18.58
Energy contribution -19.88
Covariance contribution 1.31
Combinations/Pair 1.10
Mean z-score -1.84
Structure conservation index 0.82
SVM decision value 0.13
SVM RNA-class probability 0.595728
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22635746 91 - 27905053
CAUUAUCCUUGGCGGCCUCGCGUUGUAAAACCAGAAUUAUGCUUUUUUAUUGAAAGUGAAUGAAGCAUAGAGGGUGCUCGGUAAAA---------AACAA
..(((((...((((.(((((.(((....)))).....(((((((((((((.....))))).)))))))))))).)))).)))))..---------..... ( -24.80)
>DroSec_CAF1 84162 91 - 1
CAUUAUCCUUGGCGGCCUCGCGUUGUAAAACCAGAAUUAUGCUUUUUUAUUGAAAGUGAAUGAAGCAUAGAGGGUGCUCGGUAAAA---------AACAA
..(((((...((((.(((((.(((....)))).....(((((((((((((.....))))).)))))))))))).)))).)))))..---------..... ( -24.80)
>DroSim_CAF1 85932 91 - 1
CAUUAUCCUUGGCGGCCUCGCGUUGUAAAACCAGAAUUAUGCUUUUUUAUUGAAAGUGAAUGAAGCAUAGAGGGUGCUCGGUAAAA---------AACAA
..(((((...((((.(((((.(((....)))).....(((((((((((((.....))))).)))))))))))).)))).)))))..---------..... ( -24.80)
>DroEre_CAF1 92380 91 - 1
CAUUAUCCUUGGCGGCCUCGCGUUGUAAUACCAGAAUUAUGCUUUUUUAUUGAAAGUGAAAGAAGCAUAGAGGGCGCUUGGUAAAA---------AACAA
..(((((...((((.(((((.((......))).....(((((((((((..(....)..))))))))))))))).)))).)))))..---------..... ( -27.10)
>DroYak_CAF1 87683 100 - 1
CAUUAUCCUUGGCGGCCUCGCGUUGUAAAACCAGAAUUAUGCUUUUUUAUUGAAUGUGAAAGAAGCAUAGAGGACGCUCGGUGAAAAAAAAAACAAACAA
.....((((.((((.(((((.(((....)))).....(((((((((((((.....))).)))))))))))))).)))).)).))................ ( -25.20)
>DroAna_CAF1 85809 86 - 1
UAUUAUCCUCAGCGGC-UUGCGUUGUAAAACAAGAAUUAUGCCUUUUUAUAGAAAGUGAAAGACGAAACCAG--CGCUCA--AAAA---------AACAA
..........((((.(-(.(..((((....((....(((((......)))))....))....))))..).))--))))..--....---------..... (  -9.10)
>consensus
CAUUAUCCUUGGCGGCCUCGCGUUGUAAAACCAGAAUUAUGCUUUUUUAUUGAAAGUGAAAGAAGCAUAGAGGGCGCUCGGUAAAA_________AACAA
..(((((...((((.((((..(((....)))......(((((((((((((.....))))).)))))))))))).)))).)))))................ (-18.58 = -19.88 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:30 2006