Locus 8483

Sequence ID 3R_DroMel_CAF1
Location 22,631,411 – 22,631,520
Length 109
Max. P 0.999906
window13650 window13651

overview

Window 0

Location 22,631,411 – 22,631,520
Length 109
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 96.69
Mean single sequence MFE -28.10
Consensus MFE -26.20
Energy contribution -26.87
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -3.06
Structure conservation index 0.93
SVM decision value 4.48
SVM RNA-class probability 0.999906
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22631411 109 + 27905053
AAAAUU-----CUGUUUUCAUGAAAACUGUCAGAGGCCAAAACUAAAAGCAGACAGAAGAUAAAUAAAGCAAUGCUUAUUGCUGUCCUUUGGCUGUGUGUUUGUCAUGAAAACA
......-----..((((((((((((((.((((((((.(....((......))...............((((((....))))))).)))))))).....)))).)))))))))). ( -28.60)
>DroSec_CAF1 79913 109 + 1
AAAAUU-----CUGUUUUCAUGAAAACUGUCAGAGGCCAAAACUAAAAGCAGACACAAGAUAAAUAAAGCAAUGCUUAUUGCUGUCCUUUGGCUGUGUGUUUGUCAUGAAAACA
......-----..((((((((((((((.((((((((.(....((......))...............((((((....))))))).)))))))).....)))).)))))))))). ( -28.60)
>DroSim_CAF1 81758 109 + 1
AAAAUU-----CUGUUUUCAUGAAAACUGUCAGAGGCCAAAACUAAAAGCAGACACAAGAUAAAUAAAGCAAUGCUUAUUGCUGUCCUUUGGCUGUGUGUUUGUCAUGAAAACA
......-----..((((((((((((((.((((((((.(....((......))...............((((((....))))))).)))))))).....)))).)))))))))). ( -28.60)
>DroEre_CAF1 88062 109 + 1
AAAAUU-----CUGUUUUCAUGAAAACUGUCAGAGGCCAAAACUAAAAGCAGACACAAGAUAAAUAAAGCAAUGCUUAUUGCAGUCCUUUGGCUGUGUGUUUGUCAUGAAAACA
......-----..((((((((((((((.((((((((.(....((......))................(((((....))))).).)))))))).....)))).)))))))))). ( -28.10)
>DroYak_CAF1 83176 109 + 1
AAAAUU-----CUGUUUUCAUGAAAACUGUCAGAGGCCAAAACUAAAUGCAGACACAAGAUAAAUAAAGCAAUGCUUAUUGCUGUCCUAUGGCUGUGUGUUUGUCAUGAAAACA
......-----..((((((((((...(((.((.((.......))...)))))(((((..........((((((....))))))(((....)))))))).....)))))))))). ( -26.90)
>DroAna_CAF1 81611 114 + 1
AAAAUUCAGCUCUGUUUUCAUGAAAACUGUCAGAGGCCAAAACUAAAAGCAGACACAAGAUAAAUAAAGCACUGCUUAUUGCUGUCCUUUAGCUGUGUGUUUGUCAUGAAAACA
.............((((((((((.....((.....))............((((((((((.....(((((.((.((.....)).)).))))).)).)))))))))))))))))). ( -27.80)
>consensus
AAAAUU_____CUGUUUUCAUGAAAACUGUCAGAGGCCAAAACUAAAAGCAGACACAAGAUAAAUAAAGCAAUGCUUAUUGCUGUCCUUUGGCUGUGUGUUUGUCAUGAAAACA
.............((((((((((((((.((((((((.(....((......))...............((((((....))))))).)))))))).....)))).)))))))))). (-26.20 = -26.87 +   0.67)

alignment

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secondary structure

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dotplot

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Window 1

Location 22,631,411 – 22,631,520
Length 109
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 96.69
Mean single sequence MFE -26.42
Consensus MFE -23.85
Energy contribution -24.21
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -2.40
Structure conservation index 0.90
SVM decision value 2.86
SVM RNA-class probability 0.997462
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22631411 109 - 27905053
UGUUUUCAUGACAAACACACAGCCAAAGGACAGCAAUAAGCAUUGCUUUAUUUAUCUUCUGUCUGCUUUUAGUUUUGGCCUCUGACAGUUUUCAUGAAAACAG-----AAUUUU
(((((((((((.((((.((..((((((((((((..(((((.(......).)))))...))))))((.....))))))))...))...))))))))))))))).-----...... ( -26.10)
>DroSec_CAF1 79913 109 - 1
UGUUUUCAUGACAAACACACAGCCAAAGGACAGCAAUAAGCAUUGCUUUAUUUAUCUUGUGUCUGCUUUUAGUUUUGGCCUCUGACAGUUUUCAUGAAAACAG-----AAUUUU
(((((((((((.((((((((((...(((...((((((....))))))...)))...))))))..(((.........)))........))))))))))))))).-----...... ( -25.70)
>DroSim_CAF1 81758 109 - 1
UGUUUUCAUGACAAACACACAGCCAAAGGACAGCAAUAAGCAUUGCUUUAUUUAUCUUGUGUCUGCUUUUAGUUUUGGCCUCUGACAGUUUUCAUGAAAACAG-----AAUUUU
(((((((((((.((((((((((...(((...((((((....))))))...)))...))))))..(((.........)))........))))))))))))))).-----...... ( -25.70)
>DroEre_CAF1 88062 109 - 1
UGUUUUCAUGACAAACACACAGCCAAAGGACUGCAAUAAGCAUUGCUUUAUUUAUCUUGUGUCUGCUUUUAGUUUUGGCCUCUGACAGUUUUCAUGAAAACAG-----AAUUUU
(((((((((((.((((.((..(((((..(((((....(((((.(((............)))..))))).))))))))))...))...))))))))))))))).-----...... ( -26.20)
>DroYak_CAF1 83176 109 - 1
UGUUUUCAUGACAAACACACAGCCAUAGGACAGCAAUAAGCAUUGCUUUAUUUAUCUUGUGUCUGCAUUUAGUUUUGGCCUCUGACAGUUUUCAUGAAAACAG-----AAUUUU
(((((((((((.((((...(((.(((((((.((((((....)))))).......))))))).)))......(((.........))).))))))))))))))).-----...... ( -27.50)
>DroAna_CAF1 81611 114 - 1
UGUUUUCAUGACAAACACACAGCUAAAGGACAGCAAUAAGCAGUGCUUUAUUUAUCUUGUGUCUGCUUUUAGUUUUGGCCUCUGACAGUUUUCAUGAAAACAGAGCUGAAUUUU
(((((((((((.((((...(((....(((..(((...(((((((((............))).))))))...)))....))))))...)))))))))))))))............ ( -27.30)
>consensus
UGUUUUCAUGACAAACACACAGCCAAAGGACAGCAAUAAGCAUUGCUUUAUUUAUCUUGUGUCUGCUUUUAGUUUUGGCCUCUGACAGUUUUCAUGAAAACAG_____AAUUUU
(((((((((((.((((.((..((((((((((((((((....))))).............)))))((.....))))))))...))...)))))))))))))))............ (-23.85 = -24.21 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:29 2006