Locus 8482

Sequence ID 3R_DroMel_CAF1
Location 22,630,945 – 22,631,046
Length 101
Max. P 0.995436
window13649

overview

Window 9

Location 22,630,945 – 22,631,046
Length 101
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 92.21
Mean single sequence MFE -37.70
Consensus MFE -33.49
Energy contribution -33.68
Covariance contribution 0.20
Combinations/Pair 1.20
Mean z-score -2.59
Structure conservation index 0.89
SVM decision value 2.58
SVM RNA-class probability 0.995436
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22630945 101 + 27905053
GUCGUGAUUGCCGCGUUGUGGCAACACCUUUGAUGCGGCUGCGCAUGCGCCGUGAAAAGCUCGCAAGGAAUGCAUUUUCCAAUAAUUUAGUUAGCGCGAUA
((((((...(((((((((((....)))....))))))))..)))..((((.((((.....))))..((((......)))).............))))))). ( -37.60)
>DroSec_CAF1 79444 101 + 1
GUCGUGAUUGCCGCGUUGUGGCAACACCUUUGAUGCGGCUGCGCAUGCGCCGUGAAAAGCUCGCGAGGAAUGCAUUUUCCAAUAAUUUAGUUAGCGCGAUA
((((((...(((((((((((....)))....))))))))..)))..(((((((((.....))))).((((......)))).............))))))). ( -39.40)
>DroSim_CAF1 81289 101 + 1
GUCGUGAUUGCCGCGUUGUGGCAACACCUUUGAUGCGGCUGCGCAUGCGCCGUGAAAAGCUCGCGAGGAAUGCAUUUUCCAAUAAUUUAGUUAGCGCGAUA
((((((...(((((((((((....)))....))))))))..)))..(((((((((.....))))).((((......)))).............))))))). ( -39.40)
>DroEre_CAF1 87617 101 + 1
GUCGUGAUUGCCGCGUUGUGGCAACACCUUUGAUGCGGCUGCGCAUGCGCCGUGAAAAACUCGCGAGGAAUGCAUUUUCCAAUAAUUUAGUUAGCGCGAUA
((((((...(((((((((((....)))....))))))))..)))..(((((((((.....))))).((((......)))).............))))))). ( -39.40)
>DroYak_CAF1 82706 101 + 1
GUCGUGAUUGCCGCGUUGUGGCAACACCUUUGAUGCGGCUGCGCAUGCGCCGUGAAAAACUCGCGAGGAAUGCAUUUUCCAAUAAUUUAGUUAGCGCGAUA
((((((...(((((((((((....)))....))))))))..)))..(((((((((.....))))).((((......)))).............))))))). ( -39.40)
>DroAna_CAF1 81149 100 + 1
GUCGUGAUCGCCUCUGUGCGGCAAUACCUUCGAUGCGGUUGCGCAUGCGGCGUGAAAUGUUU-UGGGGAAUGCAUUUUCCAAUAAUUCAUUCACCGCGGAA
.(((((...(((.(((((((((.((.......))...)))))))).).)))(((((.((..(-(((..((....))..)))).....)))))))))))).. ( -31.00)
>consensus
GUCGUGAUUGCCGCGUUGUGGCAACACCUUUGAUGCGGCUGCGCAUGCGCCGUGAAAAGCUCGCGAGGAAUGCAUUUUCCAAUAAUUUAGUUAGCGCGAUA
((((((...(((((((((((....)))....))))))))..)))..(((((((((.....))))).((((......)))).............))))))). (-33.49 = -33.68 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:27 2006