Locus 8481

Sequence ID 3R_DroMel_CAF1
Location 22,630,299 – 22,630,390
Length 91
Max. P 0.864339
window13648

overview

Window 8

Location 22,630,299 – 22,630,390
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.18
Mean single sequence MFE -25.29
Consensus MFE -14.39
Energy contribution -15.56
Covariance contribution 1.17
Combinations/Pair 1.21
Mean z-score -2.72
Structure conservation index 0.57
SVM decision value 0.84
SVM RNA-class probability 0.864339
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22630299 91 - 27905053
---AAUACAUAUG--U---GUAUACAGAGAAUAUCAAUAAUGUUCUCUGGCCCUUC---AGGUUUAUGGGCCAUUAAAAAGUAUGACUAUGGUUAUGCCUCU
---.(((((....--)---))))..(((((((((.....)))))))))(((((...---........)))))........(((((((....))))))).... ( -27.40)
>DroSec_CAF1 78780 96 - 1
AGGCAUACAUAUGUGU---GUAUACAGAGAAUAUCAAUAAUGUUCUCUGGCCCUUC---AGGCUUAUGGGCCAUUAAAAAGUAUGACUAUGGUUAUGCCUCU
(((((((..((((.((---.((((((((((((((.....)))))))))(((((...---........)))))........)))))))))))..))))))).. ( -33.60)
>DroSim_CAF1 80632 96 - 1
AGGCAUACAUAUGUGU---GUAUACAGAGAAUAUCAAUAAUGUUCUCUGGCCCUUC---AGGUUUAUGGGCCAUUAAAAAGUAUGACUAUGGUUAUGCCUCU
(((((((..((((.((---.((((((((((((((.....)))))))))(((((...---........)))))........)))))))))))..))))))).. ( -33.60)
>DroEre_CAF1 86854 91 - 1
---CAUACAUGUG--U---AUAUACAGAGAAUAUCAAUAAUGUUCCCUGUCCCUUC---AGGUUUAUGAGCCAUUAAAAAGUAUGACUAUGGUUAUGCCUCU
---((((.((.((--.---....((((.((((((.....)))))).)))).....)---).)).))))............(((((((....))))))).... ( -19.10)
>DroYak_CAF1 81961 97 - 1
---CAUGCAUGUG--UGUUAUACACUGGGAAUAUCAAUAAUGUUCUGUGGUCCUUCUUUAGGUUUAUGGGCCAUUAAAAAGUAUGACUAUGGUUAUGCCUCU
---...(((((..--.(((((((....(((((((.....)))))))(((((((..............)))))))......)))))))......))))).... ( -24.74)
>DroAna_CAF1 80640 81 - 1
---CGUACAU---------GUACGCACAAAAUAUCGAUAAUGUUCUCUGCCCCAGC---UGCUUUAUGGGCCAUUAAAAAGCAUGAGAAGAG------CUUU
---((((...---------.))))................(.((((((((((((..---.......))))..........))).))))).).------.... ( -13.30)
>consensus
___CAUACAUAUG__U___GUAUACAGAGAAUAUCAAUAAUGUUCUCUGGCCCUUC___AGGUUUAUGGGCCAUUAAAAAGUAUGACUAUGGUUAUGCCUCU
...(((((.................(((((((((.....)))))))))(((((..............)))))........)))))................. (-14.39 = -15.56 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:26 2006