Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,883,015 – 2,883,132 |
Length | 117 |
Max. P | 0.716741 |
Location | 2,883,015 – 2,883,132 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.14 |
Mean single sequence MFE | -40.12 |
Consensus MFE | -35.30 |
Energy contribution | -35.37 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.53 |
Structure conservation index | 0.88 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2883015 117 - 27905053 AGAUCUUGUCAAAAAGGUGUUGGAUGAGGCUCUUUUCAACUG---GUGGUUUCACCGGCACAGCAGGGAUCACUGGGAUCUCACCCGUAGCCUUGUCCCGGAGCUUCAGGGCUAGCUCCC ..(((((......)))))...(((..((((((.......(((---(((....)))))).......((((((.....))))))....).)))))..))).((((((........)))))). ( -42.30) >DroSec_CAF1 4704 117 - 1 AGAUCUUGUCAAAAAAGUGUUGGAUGAAGCUUUUUUCAACUC---GUGGUUUCACCGGCACAGCAGGGAUCACUGGGAUCUCACCCGUAGCUUUGUCCCGGAGCUUCAGGGCUAGCUCCC .((((((.........(((((((.(((((((...........---..))))))))))))))....))))))...((((.((..(((..(((((((...)))))))...)))..)).)))) ( -39.44) >DroSim_CAF1 3396 117 - 1 AGAUCUUGUCAAAAAAGUGUUGGAUGAAGCUUUUUUCAACUC---GUGGUUUCACCGGCACAGCAGGGAUCACUGGGAUCUCACCCGUAGCUUUGUCCCGGAGCUUCAGGGCUAGCUCCC .((((((.........(((((((.(((((((...........---..))))))))))))))....))))))...((((.((..(((..(((((((...)))))))...)))..)).)))) ( -39.44) >DroEre_CAF1 4693 117 - 1 AGAUCUUGUCAAAAAGGUGUUGCAUGAAGGUUUUUUCAACUUUCAUUGGCUUCAGUGGCACUGCAG---UCGCCGGGAUCUCACCCGUAGCUUUGUCCCGGAGCUUCAGGGCUAGCUCCC ...............(((((((((((((((((.....))))))))...(((.....)))..)))))---.))))((((.((..(((..(((((((...)))))))...)))..)).)))) ( -39.30) >consensus AGAUCUUGUCAAAAAAGUGUUGGAUGAAGCUUUUUUCAACUC___GUGGUUUCACCGGCACAGCAGGGAUCACUGGGAUCUCACCCGUAGCUUUGUCCCGGAGCUUCAGGGCUAGCUCCC .((((((((.......(((((((.(((((((................)))))))))))))).)))).))))...((((.((..(((..(((((((...)))))))...)))..)).)))) (-35.30 = -35.37 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:39 2006