| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,608,114 – 22,608,208 |
| Length | 94 |
| Max. P | 0.977818 |
| Location | 22,608,114 – 22,608,208 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 86.81 |
| Mean single sequence MFE | -24.29 |
| Consensus MFE | -19.19 |
| Energy contribution | -19.82 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.977818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22608114 94 + 27905053 CUGAAGUGGGUGGCCAGCUCUUCACCCACAUAUGUACAUA---UAUAUAUUACAUGCAUAUAUACUGGCAGCUCCUUCGUGCCAGGCUCAAUAAAAU .(((.((((((((........))))))))(((((((..((---.......))..)))))))...((((((.(......)))))))..)))....... ( -26.50) >DroSec_CAF1 56437 93 + 1 CUGAAGUGGGUGGCCAGCUAUUCACCCACAUAUGAAUAUAUAUUAUAUAUUAC----AUAUAUCCUGGUUGCUCCUUCGUGCCAGGCUCAAUAAAAU .(((.((((((((........))))))))((((((((((((...))))))).)----))))..((((((.((......)))))))).)))....... ( -27.00) >DroSim_CAF1 58243 90 + 1 CUGAAGUGGGUGGCCAGCUCUUCACCCACAUAUGUAUAUC---UAUAUAUAAC----AUAUAUCCUGGUUGCUCCUUCGUGCCAGUCUCAAUAAAAU .(((.((((((((........))))))))((((((((((.---...)))).))----))))...(((((.((......)))))))..)))....... ( -22.50) >DroEre_CAF1 64412 87 + 1 CUG-AGUGGGCGGCCAGCUAUUCACCCACAUGUGUACA-----UAUAUAUUAC----AUACAUCCUGGCUGCUCCUUCGUGCCUGGCUCAAUAGAAU .((-(((((((((((((............((((((...-----.))))))...----.......))))))))))...........)))))....... ( -21.15) >consensus CUGAAGUGGGUGGCCAGCUAUUCACCCACAUAUGUACAUA___UAUAUAUUAC____AUAUAUCCUGGCUGCUCCUUCGUGCCAGGCUCAAUAAAAU ..((((.((((((((((..............(((((((.....)))))))..............))))))))))))))................... (-19.19 = -19.82 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:13 2006