Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,606,329 – 22,606,424 |
Length | 95 |
Max. P | 0.542463 |
Location | 22,606,329 – 22,606,424 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 77.99 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -16.69 |
Energy contribution | -16.47 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.23 |
Mean z-score | -1.29 |
Structure conservation index | 0.63 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22606329 95 - 27905053 UGGGACUUUGGCAUGGUGCUUGGAAAGCGACGAAGUGCGAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUUAGCAGAGCGCAAGAGCGG--- ...(.((((.((...(..(((.(.......).)))..)....(((((((..((((((((((.....)).)))))))).))))))))).)))))..--- ( -29.30) >DroPse_CAF1 59791 93 - 1 GUUCGGCUUGGCUUGGUGCUCUGGAAGCGACGAAGUGCGAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUU--CAGAGAAGGAGAGCAG--- .....((((..(((....(((((((....(((((((......)))))))....((((((((.....)).))))))))--))))).))).))))..--- ( -27.20) >DroYak_CAF1 57074 93 - 1 GGG--GUUUGCCAUGGUGCUUGGAAAGCGACGAAGUGCGAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUUAGCAGAGCGCAAGAGCGG--- .(.--.(((((....(..(((.(.......).)))..)....(((((((..((((((((((.....)).)))))))).))))))))))))..)..--- ( -29.00) >DroMoj_CAF1 66779 96 - 1 GGG--GAAUGCUCUAGUGCCUGAGAAGCGACGAAGUGCGAAUGCCUCCUAAAACAAUUAGCAUGCCGUCUAAUUGUUUGUAGACGGAAAGAGAAAGCA (((--(..(((.((.((((.......)).))..)).)))....))))((((((((((((((.....).)))))))))).)))................ ( -19.30) >DroAna_CAF1 55166 95 - 1 GGGGAAAAUGUCUAGGUGCUUGCAAAGCGACGAAGUGAAAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUUGGCAGAGCGCAAAAGCGA--- ........(((....((((((((......(((((((......)))))))..((((((((((.....)).)))))))).))).)))))....))).--- ( -25.80) >DroPer_CAF1 64044 93 - 1 GUUCGGCUUGGCUUGGUGCUCUGGAAGCGACGAAGUGCGAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUU--CAGAGAAGGAGAGCAG--- .....((((..(((....(((((((....(((((((......)))))))....((((((((.....)).))))))))--))))).))).))))..--- ( -27.20) >consensus GGG__GAUUGGCUUGGUGCUUGGAAAGCGACGAAGUGCGAAUGCUUUGUGAAACAAUUAGCAUCUUGCUUAAUUGUU_GCAGAGCGCAAGAGCAG___ ................(((((........(((((((......)))))))..((((((((((.....)).))))))))............))))).... (-16.69 = -16.47 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:11 2006