Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,594,876 – 22,594,976 |
Length | 100 |
Max. P | 0.828001 |
Location | 22,594,876 – 22,594,976 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 84.03 |
Mean single sequence MFE | -20.98 |
Consensus MFE | -13.99 |
Energy contribution | -14.37 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.09 |
Mean z-score | -2.09 |
Structure conservation index | 0.67 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.828001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22594876 100 + 27905053 CGCUUACAUAAAGCUUACGUGUCCUUCUACUCAGCUCACUCUUACCA----CUUACCACUUUGUGUGGUGUUGCCUACUUUUGUGCGCAGCGCUGUCUCACUUC .((((.....))))....(((..........((((............----...(((((.....)))))(((((.(((....))).)))))))))...)))... ( -24.12) >DroSim_CAF1 44432 95 + 1 UGCUUACAUAAAGCUUACGUGUCCUUCUACUCAGCUCACUCUUACCA----CUUGCCACUC-----AGUGUUGCCUACUUUUGUGCGCAGCGCUGUCUCGCUUC .((((.....))))....(((..((.......))..)))........----...((....(-----((((((((.(((....))).)))))))))....))... ( -22.60) >DroEre_CAF1 47661 88 + 1 CGCUUACAUAAAGCUUACGUGUCCUCCUACUCAGCUCA-----------AUCUUGGCACUC-----GAGGUUGCCUACUUUUGUGCGCAGCGCUGUCUCACUUC .((((.....))))....(((..........((((...-----------..((((.....)-----)))(((((.(((....))).)))))))))...)))... ( -19.32) >DroYak_CAF1 45240 99 + 1 CGCUUACAUAAAGCUUACGUGUCUUUCCACACAGCUCACACUUACCACACUCUUGCCACUC-----GAUGUUGCCUACUUUUGUGCGCAGCGCUGUCUCACUUC .((((.....))))....(((......)))(((((.................(((.....)-----)).(((((.(((....))).))))))))))........ ( -17.90) >consensus CGCUUACAUAAAGCUUACGUGUCCUUCUACUCAGCUCACUCUUACCA____CUUGCCACUC_____GAUGUUGCCUACUUUUGUGCGCAGCGCUGUCUCACUUC .((((.....))))....(((..........((((......................(((......)))(((((.(((....))).)))))))))...)))... (-13.99 = -14.37 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:06 2006