Locus 8469

Sequence ID 3R_DroMel_CAF1
Location 22,589,138 – 22,589,238
Length 100
Max. P 0.634316
window13625

overview

Window 5

Location 22,589,138 – 22,589,238
Length 100
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 95.65
Mean single sequence MFE -18.08
Consensus MFE -17.17
Energy contribution -17.20
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -0.86
Structure conservation index 0.95
SVM decision value 0.21
SVM RNA-class probability 0.634316
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22589138 100 - 27905053
UAAA-AAAGCUAAGCUAAUGGAUAUGCAAACAACUGGCAAAAGGGACCGAACAGGACGCACAGUGCCUGCAAAUAGCAACGAACCGUAAUGCAUCUAAAUA
....-..(((...)))..((((..((((.......((((...(.(.((.....)).).)....))))(((.....)))...........)))))))).... ( -16.50)
>DroPse_CAF1 42812 96 - 1
-----AAAACUAAGCUAAUGGAUAUGCAAACAACUGGCAAAAGGGACCGGACAGGACGCACAGUGCCUGCAAAUAGCAACGAACCGUAAUGCAUCUAAAUA
-----........((..((((...(((......(((((......).)))).((((.(((...)))))))......))).....))))...))......... ( -18.10)
>DroSec_CAF1 37274 100 - 1
UAAA-AAAGCUAAGCUAAUGGAUAUGCAAACAACUGGCCAAAGGGACCGGACAGGACGCACAGUGCCUGCAAAUAGCAACGAACCGUAAUGCAUCUAAAUA
....-........((..((((...(((......((((((....)).)))).((((.(((...)))))))......))).....))))...))......... ( -21.20)
>DroYak_CAF1 39176 101 - 1
UAAAAAAAGCUAAGCUAAUGGAUAUGCAAACAACUGGCAAAAGGGACCGGACAGGACGCACAGUGCCUGCAAAUAGCAACGAACCGUAAUGCAUCUAAAUA
.............((..((((...(((......(((((......).)))).((((.(((...)))))))......))).....))))...))......... ( -18.10)
>DroAna_CAF1 39081 96 - 1
-----AAAACUAAGCUAAUGGAUAUGCAAACAACUGGCAAAAGGGACCGGACAGGACGCACAGUGCUUGCAAAUAGCAACGAACCGUAAUGCAUCUAAAUA
-----.............(((((.(((((...((((((.....(.......).....)).))))..)))))....((((((...)))..)))))))).... ( -16.50)
>DroPer_CAF1 46995 96 - 1
-----AAAACUAAGCUAAUGGAUAUGCAAACAACUGGCAAAAGGGACCGGACAGGACGCACAGUGCCUGCAAAUAGCAACGAACCGUAAUGCAUCUAAAUA
-----........((..((((...(((......(((((......).)))).((((.(((...)))))))......))).....))))...))......... ( -18.10)
>consensus
_____AAAACUAAGCUAAUGGAUAUGCAAACAACUGGCAAAAGGGACCGGACAGGACGCACAGUGCCUGCAAAUAGCAACGAACCGUAAUGCAUCUAAAUA
.............((..((((...(((......(((((......).)))).((((.(((...)))))))......))).....))))...))......... (-17.17 = -17.20 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:05 2006