Locus 8467

Sequence ID 3R_DroMel_CAF1
Location 22,579,079 – 22,579,170
Length 91
Max. P 0.817061
window13622

overview

Window 2

Location 22,579,079 – 22,579,170
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 80.76
Mean single sequence MFE -25.57
Consensus MFE -15.11
Energy contribution -16.00
Covariance contribution 0.89
Combinations/Pair 1.11
Mean z-score -2.31
Structure conservation index 0.59
SVM decision value 0.67
SVM RNA-class probability 0.817061
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22579079 91 + 27905053
AUGGCAGCCAUUUUUGCGGCUCACAAAACUAUUUUGCAUUUCAAAUGCACACACAGCAGAAGCUCGACCCAUCACGCAUACGCACCGUGUC--------
.((..((((........))))..)).........(((((.....))))).(((((((....)))...........((....))...)))).-------- ( -16.30)
>DroPse_CAF1 31726 91 + 1
CUGGCAGCCAUUUUUGUGGCAUACAAAACUAUUUUGCAUUUCAAAUGCACGCA--------ACUCCAGCCAUCACGCAUACGCACCGUGUGCGUGCGGA
.((((.(((((....)))))..............(((((.....)))))....--------......)))).((((((((((...)))))))))).... ( -31.20)
>DroSec_CAF1 27232 91 + 1
AUGGCAGCCAUUUUUGCGGCUCACAAAACUAUUUUGCAUUUCAAAUGCACACACAGCUGAAGCUCGACCCAUCACGCAUACGCACCGUGUC--------
.((..((((........))))..)).........(((((.....))))).(((((((....)))...........((....))...)))).-------- ( -16.50)
>DroWil_CAF1 70147 83 + 1
AUGGCGGCCAUUUUUGCGGCAUGUGAAACUAUUUUGCAUUUCAAAUGCACGCA--------GCUCG---CAUCACGCAUACGCACUGUAUGCGG-----
...(((((......((((((((.(((((..........))))).)))).))))--------)).))---)....(((((((.....))))))).----- ( -27.50)
>DroAna_CAF1 29287 91 + 1
CUGGCAGCCAUUUUUGCGGCAUACAAAACUAUUUUGCAUUUCAAAUGCACGCU--------GCCCCAGCCAUCACGCAUACGCAACGUGUGCGUGUCGA
..(((((((((((.(((((.(((......))).)))))....)))))...)))--------))).....(..((((((((((...))))))))))..). ( -30.70)
>DroPer_CAF1 36048 91 + 1
CUGGCAGCCAUUUUUGUGGCAUACAAAACUAUUUUGCAUUUCAAAUGCACGCA--------ACUCCAGCCAUCACGCAUACGCACCGUGUGCGUGCGGA
.((((.(((((....)))))..............(((((.....)))))....--------......)))).((((((((((...)))))))))).... ( -31.20)
>consensus
AUGGCAGCCAUUUUUGCGGCAUACAAAACUAUUUUGCAUUUCAAAUGCACGCA________GCUCCAGCCAUCACGCAUACGCACCGUGUGCGU_____
.(((..(((........)))..............(((((.....)))))...................)))...((((((((...))))))))...... (-15.11 = -16.00 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:02 2006