Locus 8466

Sequence ID 3R_DroMel_CAF1
Location 22,574,888 – 22,575,003
Length 115
Max. P 0.519053
window13621

overview

Window 1

Location 22,574,888 – 22,575,003
Length 115
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 77.94
Mean single sequence MFE -16.44
Consensus MFE -3.16
Energy contribution -5.92
Covariance contribution 2.76
Combinations/Pair 1.24
Mean z-score -1.67
Structure conservation index 0.19
SVM decision value -0.03
SVM RNA-class probability 0.519053
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22574888 115 - 27905053
UGGCAAAAUCAAGUUUCUAUUAAAUUCACUUUUGCUUAACAACAAAUCUUACGAUUCUUUAAGCAUAACUU-UCUAUUGUUAUUUUUUAACAAUUUGUACGCAUGCCAAUCUCAGC
(((((...........................(((((((.....((((....))))..)))))))......-...(((((((.....))))))).........)))))........ ( -17.10)
>DroSec_CAF1 23118 115 - 1
UGGCCAAAUCAAGUUUCUAUUAAAUUCACUUUUGCUUAACAACAAAUCUUACGAUUCUUUAAGCAGAACUU-UCUAUUAUUAUUUUUUAACGAUUUGUACGCAUGCCAAUCUCAGC
((((((((((.(((((.....)))))...((((((((((.....((((....))))..))))))))))...-...................)))))).......))))........ ( -16.11)
>DroSim_CAF1 24803 115 - 1
UGGCCAAAUCAAGUUUCUAUUAAAUUCACUUUUGCUUAACAACAAGUCUUACGAUUCUUUAAGCAGAACUU-UCUAUUGUUAUUUUUUAACGAUUUGUACGCAUGCCAAUCUCAAC
((((((((((...................((((((((((.....((((....))))..))))))))))...-......((((.....)))))))))).......))))........ ( -19.61)
>DroEre_CAF1 27448 109 - 1
-----GAAUCUAGUUUCUAUUAAAUUCACUUUUGCUUAAAAC--AGUCUUAAGAUUCUUUAGGCAGAACUUCUUUUUUGAUAUGCUUUAACGAUUUGUGCACACGCCAAUCUCAGC
-----......(((...(((((((.....(((((((((((..--((((....)))).))))))))))).......))))))).))).....((((.(((....))).))))..... ( -18.20)
>DroYak_CAF1 24426 87 - 1
-----AAAUCAAGUUUCUAUUAAAUUCACUUUUGCUUAACAA--AAUCCAA----------------------CCUUUGUUACUUUUUAAUGGCUUGCGCACAUGCCAAACUUAGC
-----.....(((((.....................((((((--(......----------------------..)))))))........((((.((....)).)))))))))... ( -11.20)
>consensus
UGGC_AAAUCAAGUUUCUAUUAAAUUCACUUUUGCUUAACAACAAAUCUUACGAUUCUUUAAGCAGAACUU_UCUAUUGUUAUUUUUUAACGAUUUGUACGCAUGCCAAUCUCAGC
.............................((((((((((.....((((....))))..)))))))))).......................((((.(((....))).))))..... ( -3.16 =  -5.92 +   2.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:01 2006