Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,573,771 – 22,573,861 |
Length | 90 |
Max. P | 0.754313 |
Location | 22,573,771 – 22,573,861 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.03 |
Mean single sequence MFE | -29.67 |
Consensus MFE | -17.11 |
Energy contribution | -17.17 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.21 |
Mean z-score | -2.27 |
Structure conservation index | 0.58 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22573771 90 + 27905053 AAACAUUUGCUCCGAGGAUGCUGAGAAAUCUCUCG-----GAUUUGCGCAUGCGCCGCGGAUG-----UGGACUUCUCUUAUACCAACAGAGAGAUUUCG ..(((((((((((((((((........))).))))-----))...(((....))).)))))))-----).((..((((((.........))))))..)). ( -31.50) >DroSec_CAF1 22031 90 + 1 AAACAUUCGCUCCGAGGAUGCUGAGAUAUCUCUUG-----GAUUUGCGCAUGCGCCGCGGAUG-----UGGACUUCUCUUAUACCAAUAGAGAGAUUUCG ..((((((((((((((((((......)))).))))-----))...(((....))).)))))))-----).((..((((((.........))))))..)). ( -31.30) >DroSim_CAF1 23694 90 + 1 AAACAUUCGCUCCGAGGAUGCUGAGAUAUCUCUUG-----GAUUUGCGCAUGCGCCGCGGAUG-----UGGACUUCUCUUAUACCAAUAGAGAGAUUUCG ..((((((((((((((((((......)))).))))-----))...(((....))).)))))))-----).((..((((((.........))))))..)). ( -31.30) >DroEre_CAF1 26363 89 + 1 AAACAUCCGCUCUGAGGAUGCUGAGAAAUCUCUUG-----GAAUUGCGCAUGCGCCGCGGAUG-----UGAAGUUCUCUUAUACCAACAGAGAAAU-GCA ..((((((((((..(((((........))).))..-----))...(((....))).)))))))-----)(...((((((.........))))))..-.). ( -29.70) >DroYak_CAF1 23307 88 + 1 AAACAUCCGCUUUAAAGAUGCUGA-AAAUCUCUGG-----GAAUUGCGCAUGCGCCGCGGAUG-----UGAACUUCUCUUAUACCAACAGAGAGAU-UCG ..((((((((((((.((((.....-..)))).)))-----)....(((....))).)))))))-----)(((.((((((.........)))))).)-)). ( -26.10) >DroPer_CAF1 30703 95 + 1 AAACAUUCGCUG---GGGAGCGGAGCUCUUUCUUGUCAGAGAUCUGCGCAUGCGUCGCGGACAGAGAAUGGUAAUCUCUUAUACCAUCGGAGAGAA-CC- ...(((((.(((---((((((...))))))((((....))))(((((((....).))))))))).)))))....((((((.........)))))).-..- ( -28.10) >consensus AAACAUUCGCUCCGAGGAUGCUGAGAAAUCUCUUG_____GAUUUGCGCAUGCGCCGCGGAUG_____UGGACUUCUCUUAUACCAACAGAGAGAU_UCG ...(((((((............(((....))).............(((....))).)))))))...........((((((.........))))))..... (-17.11 = -17.17 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:00 2006