Locus 8463

Sequence ID 3R_DroMel_CAF1
Location 22,569,465 – 22,569,558
Length 93
Max. P 0.681748
window13616

overview

Window 6

Location 22,569,465 – 22,569,558
Length 93
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 82.91
Mean single sequence MFE -17.40
Consensus MFE -14.50
Energy contribution -14.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.83
SVM decision value 0.31
SVM RNA-class probability 0.681748
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22569465 93 - 27905053
AU-CUACACUUCCCAUACCCAUACCCAUACCCAUUCC------CAAUCCACAUUCAGUUUCAGCUCCAACUCCAGCUGUCUUAGCCGUGCGUGGCUGGGC
..-................................((------((..((((...(.(((.(((((........)))))....))).)...)))).)))). ( -16.80)
>DroSec_CAF1 17738 99 - 1
AU-CUCCACUUCUCAUACGCAUACCCAUUCCCAUGCCCAAUCUCAAUCCACCUUCAGUUCCAGCUCCAACUCCAGCUGUCUUAGCCGUGCGUGGCUGGGC
..-...............................((((......................(((((........)))))....(((((....))))))))) ( -17.60)
>DroSim_CAF1 19362 99 - 1
AU-CUCCACUUCCCAUACCCAUGCCCAUUCCCAUGCCCAAUCUCAAUCCACCUUCAGUUCCAGCUCCAACUCCAGCUGUCUUAGCCGUGCGUGGCUGGGC
..-...................(((((...((((((.(...........((.....))..(((((........)))))........).)))))).))))) ( -19.80)
>DroYak_CAF1 18206 94 - 1
UAUCCGCAUUUCACAUUC-----ACCAU-CCCCAUCCCAAUCCCAAACCCAGUUCAGUUCCAGCUCCAACUCCAGCUGUCUUAGCCGUGCGUGGCUGGGC
..................-----.....-......((((...(((..(.(.(((.((...(((((........))))).)).))).).)..))).)))). ( -15.40)
>consensus
AU_CUCCACUUCCCAUACCCAUACCCAUUCCCAUGCCCAAUCUCAAUCCACCUUCAGUUCCAGCUCCAACUCCAGCUGUCUUAGCCGUGCGUGGCUGGGC
.............................(((............................(((((........)))))....(((((....)))))))). (-14.50 = -14.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:56 2006