| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,568,570 – 22,568,676 |
| Length | 106 |
| Max. P | 0.575703 |
| Location | 22,568,570 – 22,568,676 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.07 |
| Mean single sequence MFE | -24.35 |
| Consensus MFE | -13.47 |
| Energy contribution | -13.63 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22568570 106 + 27905053 CACCAUUUU---ACCA-AC--CCACUCACCGGCACAUAAAUUAUGCAUAUUUAGCAGAGUGAAAUUGAAAACUAAUUAAUUACACUUGCAGCCCGGAGCAGCAGCAGCUAAG----- .........---....-..--...(((.(.(((...(((((.......)))))(((.((((.((((((.......)))))).))))))).))).)))).(((....)))...----- ( -19.50) >DroVir_CAF1 22613 100 + 1 UUUC-----------A-GG--CCAGUCACCGGCACAUAAAUUAUGCAUAUUUAGCUGAGUGAAAUUGAAAACUAAUUAAUUACACUUGCAGCCGGAAGCG---UCGGAAAAGCAAAC ((((-----------.-((--(..((..(((((...(((((.......)))))((.(((((.((((((.......)))))).))))))).)))))..)))---)).))))....... ( -24.60) >DroWil_CAF1 50963 107 + 1 CCUCU---AGCAUCCAGUCAUCUAGUCACCGGCACAUAAAUUAUGCAUAUUUAGCAGAGUGAAAUUGAAAACUAAUUAAUUACACUUGCAGCCGGAAGCCGGA--GGGUGAA----- ((((.---.((....((....)).....(((((...(((((.......)))))(((.((((.((((((.......)))))).))))))).)))))..))..))--)).....----- ( -30.20) >DroMoj_CAF1 19253 103 + 1 CUACA--------GCA-GG--CCAGUCACCGGCACAUAAAUUAUGCAUAUUUAGCUGAGCGAAAUUGAAAACUAAUUAAUUACACUUGCAGCCGGAAGCG---CUGGCAGGGCAAAA .....--------((.-.(--(((((..(((((...(((((.......)))))((.(((.(.((((((.......)))))).).))))).)))))....)---)))))...)).... ( -29.50) >DroAna_CAF1 18338 106 + 1 CCUCAUACC---CCCUAUCCUUCAUUCACCGGCACAUAAAUUAUGCAUAUUUAGCAGAGUGAAAUUGAAAACUAAUUAAUUACACUUGCAGCCCCGAGCA---GCGGCUAAG----- .........---..................(((...(((((.......)))))(((.((((.((((((.......)))))).))))))).)))(((....---.))).....----- ( -16.30) >DroPer_CAF1 22550 107 + 1 CCAGGGUGGGCGCCCAGUC--ACAGUCACCGGCACAUAAAUUAUGCAUAUUUAGCCGAGUGAAAUUGAAAACUAAUUAAUUACACUUGCAGCCCCAAGCA---GCGGCUAAG----- ...((((....)))).(((--.........))).................(((((((((((.((((((.......)))))).)))))((.((.....)).---)))))))).----- ( -26.00) >consensus CCUCA________CCA_UC__CCAGUCACCGGCACAUAAAUUAUGCAUAUUUAGCAGAGUGAAAUUGAAAACUAAUUAAUUACACUUGCAGCCCGAAGCA___GCGGCUAAG_____ ..............................(((...(((((.......)))))((.(((((.((((((.......)))))).))))))).)))........................ (-13.47 = -13.63 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:55 2006