| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,566,523 – 22,566,613 |
| Length | 90 |
| Max. P | 0.511188 |
| Location | 22,566,523 – 22,566,613 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 78.83 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -13.07 |
| Energy contribution | -13.23 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.47 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.511188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22566523 90 - 27905053 GCAACCUGCAUGGCUGCUGCUGAGAUAAGAAUUAAUUGGCAAGUGCACUGUGCAAAUAAAUUGCAUAGCCAUCCGGAU-----------GUGG----GUUUCGGU (.((((..(((.((.(((((..(............)..)).))))).((((((((.....))))))))((....))))-----------)..)----))).)... ( -26.20) >DroVir_CAF1 20241 84 - 1 GCGACCCGCAUGGCU---GCUGAGAUAAGAAUUAAUUGGCAAGUGCAGUGUGCAAAUAAAUUGCAUAGCCCG---GCA-----------AUAG----GCGAUGCU .......((((.(((---((((.(((....)))....(((..(((((((..........))))))).)))))---)).-----------...)----)).)))). ( -22.20) >DroEre_CAF1 18966 101 - 1 GCAACCUGCAUGGCUGCUGCUGAGAUAAGAAUUAAUUGGCAAGUGCACUGUGCAAAUAAAUUGCAUAGCCAUCCGGGUGGCGUGGCUAUGUGG----GUUUCGGU (.((((..((((((..((((..(............)..))).......(((((((.....)))))))(((((....))))))..))))))..)----))).)... ( -40.00) >DroWil_CAF1 44866 83 - 1 GGGACCCGCAUGGCU---GCUGAGAUAAGAAUUAAUUGGCAAGUGCAGUGUGCAAAUAAAUUGCAUAGCCAA---AGA-----------GUGG----GGGCGGG- .(..(((((.(((((---((..(............)..))..(((((((..........)))))))))))).---...-----------))))----)..)...- ( -25.20) >DroMoj_CAF1 16984 84 - 1 ACGACCCGCAUGGCU---GCUGAGAUAAGAAUUAAUUGGCAAGUGCAGUGCGCAAAUAAAUUGCAUAGCCAU---GCA-----------AUAG----GCGGGGGU ...((((((((((((---((..(............)..))..(((((((..........)))))))))))))---)).-----------....----....)))) ( -26.60) >DroAna_CAF1 16126 89 - 1 GCAACCUGCAUGGCUGCUGCUGAGAUAAGAAUUAAUUGGCAAGUGCACUGUGCAAAUAAAUUGCAUAGCC-----GGU-----------GUGGAGAGGGCACAGA (((.((.....)).)))(((..(............)..))).((((.((((((((.....))))))))((-----...-----------.......))))))... ( -24.90) >consensus GCAACCCGCAUGGCU___GCUGAGAUAAGAAUUAAUUGGCAAGUGCACUGUGCAAAUAAAUUGCAUAGCCAU___GGA___________GUGG____GCGACGGU ...........(((....((..(............)..))........(((((((.....))))))))))................................... (-13.07 = -13.23 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:54 2006