Locus 846

Sequence ID 3R_DroMel_CAF1
Location 2,882,470 – 2,882,590
Length 120
Max. P 0.515573
window1347

overview

Window 7

Location 2,882,470 – 2,882,590
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.18
Mean single sequence MFE -27.12
Consensus MFE -19.59
Energy contribution -19.65
Covariance contribution 0.06
Combinations/Pair 1.12
Mean z-score -1.40
Structure conservation index 0.72
SVM decision value -0.04
SVM RNA-class probability 0.515573
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2882470 120 - 27905053
CUCUUUGCAGACUCGACCUUUUUGUUUAGCUUAUCAUUGGUUUCUUCUCGUAUAGUGGAGUCCAAGUUACUGAGUUUGACGAAGUAGUCUUCGUUGGGCGUGUCCUUUUUUUUCUGAUCC
.......((((...(((..(((((((.((((((...((((...((((.(.....).)))).)))).....)))))).)))))))..)))......(((....))).......)))).... ( -27.40)
>DroSec_CAF1 4156 114 - 1
CUCUUGGCAGACUCGACCUUUUUGUUUGGCUUAUCACUGGUUUCUUCUCGUAUAGUGGAGUCCAAGUUACUAAGUUUGACGAAGUAGUCUUCUUUGGGCUUGUC------UUUCUUAUCU
.....((((..((((((..(((((((..(((((..(((((...((((.(.....).)))).)).)))...)))))..)))))))..)))......)))..))))------.......... ( -26.20)
>DroSim_CAF1 2848 114 - 1
CUCUUGGCAGACUCGACCUUUUUGUUUGGCUUAUCACUGGUUUCUUCUCGUAUAGUGGAGUCCAAGUUACUAAGUUUGACGAAGUAGUCUUCUUUGGGCUUGUC------UUUCUUAUCU
.....((((..((((((..(((((((..(((((..(((((...((((.(.....).)))).)).)))...)))))..)))))))..)))......)))..))))------.......... ( -26.20)
>DroEre_CAF1 4148 105 - 1
CUCUUUGCAGACUCGGCAUUCUUGUUCAGCUUAUCACUGCUUUCUUCUCGGAUAGUGGAGGCCAAGUUACUGAGUUUGACGAAGUAGUCUUCGU---------U------UUUCUGAUCU
.......(((((((((....((((....((((.((((((((........)).))))))))))))))...)))))))))((((((....))))))---------.------.......... ( -28.70)
>consensus
CUCUUGGCAGACUCGACCUUUUUGUUUAGCUUAUCACUGGUUUCUUCUCGUAUAGUGGAGUCCAAGUUACUAAGUUUGACGAAGUAGUCUUCGUUGGGCUUGUC______UUUCUGAUCU
(((..((.(((((......(((((((.((((((..(((((...((((.(.....).)))).)).)))...)))))).))))))).))))).))..)))...................... (-19.59 = -19.65 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:37 2006