| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,564,534 – 22,564,635 |
| Length | 101 |
| Max. P | 0.554145 |
| Location | 22,564,534 – 22,564,635 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.94 |
| Mean single sequence MFE | -31.06 |
| Consensus MFE | -18.92 |
| Energy contribution | -19.53 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22564534 101 + 27905053 AUAAUACCU--CA---------CACGCUUUGUGAACUGCAGUUAUUGCUCAUUUGAGCAUAUUAAAUGACGAUGUGCUCCA--------GAGUGCGGCGCAUGGGGCAAAUCCUUUUAGU .........--..---------...((((..((..((((.......((((....(((((((((.......)))))))))..--------))))))))..))..))))............. ( -27.71) >DroSec_CAF1 12767 99 + 1 AUAAUACCU--CA---------CAUGCU--GUGCAUUGCAAUUAUUGCUCAUUUGAGCAUAUUUAAUGAUGAUGUGCUCCA--------GAGUGCGGUGCAUGGGGCAAAUCCUUUUAGU .........--..---------..((((--(((((((((.......((((....(((((((((.......)))))))))..--------)))))))))))))..))))............ ( -28.71) >DroSim_CAF1 14396 99 + 1 AUAAUACCU--CA---------CAUGCU--GUGCAUUGCAAUUAUUGCUCAUUUGAGCAUAUUUAAUGAUGAUGUGCUCCA--------GAGUGCGGGGCAGGGGGCAAAUCCUUUUAGU ......(((--(.---------..((((--.(((((((((.....)))......(((((((((.......)))))))))..--------.)))))).)))).)))).............. ( -31.40) >DroEre_CAF1 16888 101 + 1 AUAAUACCU--CA---------CACCCU--GUGCAUUGCAAUUAUUGCUCAUUUGAGCAUAUUAAAUGAUGAUGUGCUCUA------GAGAGUGCGGCGCGUGGGGCAAAUCCUUUUAGU .........--..---------..(((.--.(((.(((((.......(((....((((((((((.....))))))))))..------)))..))))).)))..))).............. ( -31.00) >DroYak_CAF1 13059 109 + 1 AUAAUACCUCUCA---------CAUGCU--GUGCAUUGCAAGCAUUGCUCAUUUGAGCAUAUUAAAUGAUGAUGUGCUCUAUGAUGAGUGAGUGCGGCGCAUGGGGCAAAUCCUUUUAGU ........(((((---------..((((--(..(..((....))(..((((((.((((((((((.....))))))))))...))))))..))..)))))..))))).............. ( -36.70) >DroAna_CAF1 13991 112 + 1 AUAAUGGCU--CAUCUUCGGCCCAUGCU--GUUCAUUGCCAGCCUUGCUCAUUUGAGCAUAUUCAAUG---AUGUGUUCUAGCA-GAUGGAGUGCGGCACAUGGAGCAAAUCCUUUUAGU ....((((.--......((((....)))--)......))))(((.(((((....))))).........---..(..(((((...-..)))))..))))....(((.....)))....... ( -30.82) >consensus AUAAUACCU__CA_________CAUGCU__GUGCAUUGCAAUUAUUGCUCAUUUGAGCAUAUUAAAUGAUGAUGUGCUCCA________GAGUGCGGCGCAUGGGGCAAAUCCUUUUAGU .........................(((..((((.(((((..............(((((((((.......))))))))).............))))).))))..)))............. (-18.92 = -19.53 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:52 2006