Locus 8453

Sequence ID 3R_DroMel_CAF1
Location 22,548,616 – 22,548,706
Length 90
Max. P 0.619991
window13603

overview

Window 3

Location 22,548,616 – 22,548,706
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 78.18
Mean single sequence MFE -22.08
Consensus MFE -15.62
Energy contribution -16.01
Covariance contribution 0.39
Combinations/Pair 1.06
Mean z-score -1.11
Structure conservation index 0.71
SVM decision value 0.18
SVM RNA-class probability 0.619991
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22548616 90 + 27905053
UAUAUAUAUAUAUCUCAGGUGGAACACUCACCUCCUCGUUGAAGAGCUUCCUCACUUCCCGAGGACCAACGUGCGGGGAGACCAGCUGGA
..............((((.(((....(((.(((.(.(((((.......(((((.......))))).))))).).)))))).))).)))). ( -25.20)
>DroPse_CAF1 4564 72 + 1
CACU----------UC--------CACUUACCUCCUCGUUGAACAGCUUCCGCAGCUCCCGUGGCCCCAUCUGCGGGGAUACCAGCUGGA
....----------((--------((((....(((((((.((.......((((.......)))).....)).)))))))....)).)))) ( -18.20)
>DroSec_CAF1 4564 88 + 1
UAUAU--AUAAAUCUCAGUUGUAACACUCACCUCCUCAUUGAAGAGCUUCCUCACUUCCCGAGGACCAACGUGCGGGGAGACCAGCUGGA
.....--.......(((((((......................(((....))).(((((((.(......)...)))))))..))))))). ( -21.10)
>DroEre_CAF1 4540 80 + 1
UAUA----------UCAGUUGGAACACUCACCUCCUCGUUGAAGAGCUUCCUCACUUCCCGAGGACCAACGUGCGGGGAGACCAGCUGGA
....----------((((((((....(((.(((.(.(((((.......(((((.......))))).))))).).)))))).)))))))). ( -27.50)
>DroYak_CAF1 4577 80 + 1
ACUA----------UCAGUUAGAACACUCACCUCCUCGUUGAAGAGCUUCCUCACUUCCCGAGGACCAACGUGCGGGGAGACCAGCUGGA
....----------((((((.((....))..((((((((.........(((((.......))))).......))))))))...)))))). ( -23.29)
>DroPer_CAF1 4499 72 + 1
CACU----------UC--------CACUUACCUCCUCGUUGAACAGCUUCCGCAGCUCCCGUGGCCCCAUCUGCGGGGAUACCAGCUGAA
....----------..--------...................(((((.((((.......))))((((......)))).....))))).. ( -17.20)
>consensus
UAUA__________UCAGUUGGAACACUCACCUCCUCGUUGAAGAGCUUCCUCACUUCCCGAGGACCAACGUGCGGGGAGACCAGCUGGA
........................((((...((((((((.........(((((.......))))).......))))))))...)).)).. (-15.62 = -16.01 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:45 2006