Locus 8452

Sequence ID 3R_DroMel_CAF1
Location 22,547,628 – 22,547,718
Length 90
Max. P 0.703446
window13602

overview

Window 2

Location 22,547,628 – 22,547,718
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 80.00
Mean single sequence MFE -29.52
Consensus MFE -19.09
Energy contribution -20.67
Covariance contribution 1.59
Combinations/Pair 1.25
Mean z-score -1.62
Structure conservation index 0.65
SVM decision value 0.36
SVM RNA-class probability 0.703446
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22547628 90 - 27905053
CAACGGUGGUGUCGACGAAGAAGCGGAAGCAGAAGACGGCAUAAAGGUAAUCCGACCAGUGGCCAUGUCUGGUCAAGCGACUGGACAGCA
...((.((((((((.(......((....))....).)))).....((....)).)))).))((..((((..(((....)))..)))))). ( -29.40)
>DroGri_CAF1 5640 75 - 1
GAAUGGCGGCAUCGAUGC------------CGCUGAUGGCAUCAAAGUGAUACGACCGAUUGCCAUC---GGUCAGGUGGGCGGACAAUU
.....((..(((((((((------------((....)))))))..........(((((((....)))---)))).)))).))........ ( -25.70)
>DroSec_CAF1 3576 90 - 1
CAACGGUGGUGUCGACGAAGAAGCGGAAGCAGAAGACGACAUCAAGGUAAUCCGACCAGUGGCCAUGUCUGGUCAAGCGACUGGACAGCA
....((((((((((.(......((....))....).)))))))..(((......)))....))).((((..(((....)))..))))... ( -31.90)
>DroSim_CAF1 3587 90 - 1
CAACGGUGGUGUCGACGAAGAAGCGGAAGCAGAAGACGACAUCAAGGUAAUCCGACCAGUGGCCAUGUCUGGUCAAGCGACUGGACAGCA
....((((((((((.(......((....))....).)))))))..(((......)))....))).((((..(((....)))..))))... ( -31.90)
>DroEre_CAF1 3553 90 - 1
CAACGGUGGCGUUGAUGAAGAAGCGGAAGCAGAGGACGGCAUCAAGGUAAUCCGACCAGUGGCCAUGUCUGGUCAAGCCCCUGGACCACA
.....(((((............((....))..(((..(((.....((....))((((((.........))))))..)))))).).)))). ( -28.40)
>DroYak_CAF1 3588 90 - 1
CAACGGCGGUGUGGAUGAAGAGCCGGAAGCAGAGGACGGCAUCAAGGUAAUCCGACCAGUGGCCAUGUCUGGUCAAGCGGCUGGACAGCA
....((((((.(((((...((((((...........)))).))......))))))))....))).((((..(((....)))..))))... ( -29.80)
>consensus
CAACGGUGGUGUCGACGAAGAAGCGGAAGCAGAAGACGGCAUCAAGGUAAUCCGACCAGUGGCCAUGUCUGGUCAAGCGACUGGACAGCA
....((((((((((........((....))......)))))))..(((......)))....))).(((((((((....)))))))))... (-19.09 = -20.67 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:44 2006