Locus 8450

Sequence ID 3R_DroMel_CAF1
Location 22,546,900 – 22,547,005
Length 105
Max. P 0.630149
window13599

overview

Window 9

Location 22,546,900 – 22,547,005
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 80.82
Mean single sequence MFE -41.87
Consensus MFE -26.90
Energy contribution -26.27
Covariance contribution -0.63
Combinations/Pair 1.43
Mean z-score -1.62
Structure conservation index 0.64
SVM decision value 0.20
SVM RNA-class probability 0.630149
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22546900 105 - 27905053
CCAACUUUGGCCACUCGAGCACUCUGGAUUCGAAUGCAGCCGGGGCCAUUGGCAGCAGCUCGACGGCGCAUAGUUUCGGAUCACUGAAACUGAGCCGGUCCUCGC
........((((..((((((..((.......)).(((.(((((.....))))).))))))))).(((...(((((((((....))))))))).)))))))..... ( -37.70)
>DroVir_CAF1 4071 105 - 1
CAAAUUUCGCUCACUCCACGGCGCUGGAGUCGGGCGCGGGCACAGUCAUUGGCAGCAGUGCGACAGCGCAUAGCUUUGGCUCACUGAAGCUGAGCAAAUCCUCGC
........((((((((((......)))))).))))(((((....((.....)).((.((((....)))).((((((..(....)..)))))).)).....))))) ( -38.00)
>DroPse_CAF1 2769 99 - 1
CCAACUUUGGACACUCGAGCAACCAGGAGUCGGG------CGUUGCCAUCGGCAGCAGCUCGACGGCGCACAGCUUUGGAUCGCUGAAGCUGAGCAAAUCCUCCC
(((....)))..............((((((((((------(((((((...)))))).)))))))...((.((((((..(....)..)))))).))...))))... ( -40.40)
>DroEre_CAF1 2825 105 - 1
CCAACUUUGGCCACUCGAGCACUCUGGAUUCGGGUGCGGCUGGCGCCAUCGGCAGCAGCUCGACGGCGCAUAGCUUCGGAUCCCUGAAGCUGAGCAGGUCCUCGC
........((((......((((((.......)))))).(((.(((((.(((((....)).))).))))).(((((((((....)))))))))))).))))..... ( -45.90)
>DroYak_CAF1 2854 105 - 1
CCAACUUUGGCCACUCGAGCACCCUGGAUUCGGGUGCGGCUGGUGCCAUUGGCAGCAGCUCGACGGCGCAUAGUUUCGGGUCCCUGAAGCUGAGCAGGUCCUCGC
((.......(((..((((((((((.......)))))).((((.((((...)))).)))))))).)))((.(((((((((....))))))))).)).))....... ( -48.80)
>DroPer_CAF1 2701 99 - 1
CCAACUUUGGACACUCGAGCAACCAGGAGUCGGG------CGUUGCCAUCGGCAGCAGCUCGACGGCGCACAGCUUUGGAUCGCUGAAGCUGAGCAAAUCCUCCC
(((....)))..............((((((((((------(((((((...)))))).)))))))...((.((((((..(....)..)))))).))...))))... ( -40.40)
>consensus
CCAACUUUGGCCACUCGAGCACCCUGGAGUCGGGUGCGGCCGGUGCCAUCGGCAGCAGCUCGACGGCGCAUAGCUUCGGAUCACUGAAGCUGAGCAAAUCCUCGC
........(((..((((((.........))))))....)))...(((.(((((....)).))).)))((.(((((((((....))))))))).)).......... (-26.90 = -26.27 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:41 2006