Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,881,799 – 2,881,919 |
Length | 120 |
Max. P | 0.568207 |
Location | 2,881,799 – 2,881,919 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -24.95 |
Consensus MFE | -19.30 |
Energy contribution | -19.67 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.18 |
Mean z-score | -1.49 |
Structure conservation index | 0.77 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568207 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2881799 120 + 27905053 CCAAAUGCCAGUUCCCUCCCUUCUGGUCAGGACUCAACUUCAACUAAGACCUCUAAGGUUAACUCUCAACUAGAGUUGCCAUUAAAAAUUGUGGCCAAGCAUGAAGCUCCGACUGAGUUU ......(((((((.(((.((....))..)))......(((((.....((((.....))))((((((.....))))))(((((........)))))......)))))....))))).)).. ( -26.70) >DroSec_CAF1 3491 120 + 1 CCAAAUACCAGUACCCUCCCCUCUGGUCAGGACUCAACUUCAAAAAAGACCUCUAAGGUUAACUCUCAACUAGAGUUGCCAUUAAAAAUUGUGGCAAAGCAUGAAGCUCCAACUGAGUUU ......(((((...........)))))..(((((((.(((((.....((((.....))))((((((.....))))))(((((........)))))......))))).......))))))) ( -26.90) >DroSim_CAF1 2183 120 + 1 CCAAAUACCAGUACCCUCUCUUCGGGUCGGGAUUCAACUUCAAAAAAAACCUCUAAGGUUAACACUCAACUAGAGUUGCCAUUAAAAAUUGUGGCCAAGCAUGAAGCUCCAACUGAGUUU ......((((((.(((..((....))..)))......(((((.....((((.....))))...((((.....)))).(((((........)))))......))))).....)))).)).. ( -26.60) >DroEre_CAF1 3516 120 + 1 UCAAAUAAUAUUACCCUCUCUUCUUGUAAGGACUCUACUUCAACAAAUACCUCUAAGGUUGUCUCUCAACUGGAAUUGCCAUUAAAAAUUGUGGCCAAGCAUGAAGCUCCAACUGAGUUU ..............(((..(.....)..)))((((.....................(((((.....)))))(((...(((((........)))))...((.....)))))....)))).. ( -19.60) >consensus CCAAAUACCAGUACCCUCCCUUCUGGUCAGGACUCAACUUCAAAAAAGACCUCUAAGGUUAACUCUCAACUAGAGUUGCCAUUAAAAAUUGUGGCCAAGCAUGAAGCUCCAACUGAGUUU ........((((..(((..(.....)..)))......(((((.....((((.....))))((((((.....))))))(((((........)))))......))))).....))))..... (-19.30 = -19.67 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:36 2006