Locus 8448

Sequence ID 3R_DroMel_CAF1
Location 22,527,201 – 22,527,308
Length 107
Max. P 0.790936
window13596

overview

Window 6

Location 22,527,201 – 22,527,308
Length 107
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 79.40
Mean single sequence MFE -33.02
Consensus MFE -19.67
Energy contribution -19.50
Covariance contribution -0.17
Combinations/Pair 1.17
Mean z-score -1.94
Structure conservation index 0.60
SVM decision value 0.59
SVM RNA-class probability 0.790936
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22527201 107 - 27905053
CGGCGAAGUGGCUGCUGCCAGAGAUAAUGGAAUUUGCGGCGUUGGCGUUGCUUAUGACAGCAAAAUCGCAGGUAAGUGGCUUU-GGCAGUAUUC-GCU-------GAA-UAAAU-AUA
(((((((.....(((((((((((...((...(((((((((....)).(((((......)))))...)))))))..))..))))-))))))))))-)))-------)..-.....-... ( -39.20)
>DroVir_CAF1 255155 101 - 1
UGGCGAAGUGGCUGCUGCCAGAGAUAAUGGAAUUUGCGGCGUGGGCGUUGCCUAUGACAGCAAAAUCGCAGGUAAGUGGAUUU-GGCAAGA---------------AG-CAAUUACAG
.......((((.((((((((((..((.((((.(((((..(((((((...)))))))...))))).)).))......))..)))-)))....---------------))-)).)))).. ( -31.30)
>DroGri_CAF1 212695 102 - 1
CGGCGAAGUGGCUGCUGCCAGAGAUAAUGGAAUUUGCGGCGUGGGCGUUGCUUAUGACAGUAAAAUCGCAGGUAAGUGGAUUU-GGCAGUG---------------GGUCACAUACAG
.......(((((..((((((((.....((..((..((((((....))))))..))..))......((((......)))).)))-)))))..---------------).))))...... ( -35.00)
>DroWil_CAF1 178684 116 - 1
UGGCGAAGUAUCUGCUGCCAGAGAUAAUGGAAUUUGUGGCGUUGGCGUUGCUUAUGACAGCAAAAUCGCAGGUAAGUGGCUUUUGCCAAAAGUCAGUUGGUGUGGGAA-UUAAU-AGA
((((....(((((((.((((.((((......)))).))))...((..(((((......)))))..)))))))))..((((....))))...))))((((((......)-)))))-... ( -34.40)
>DroMoj_CAF1 268099 101 - 1
UGGCGAAGUGGCUGCUGCCAGAGAUAAUGGAAUUUGCGGCGUGGGUGUUGCUUAUGACAGCAAAAUCGCAGGUAAGUGGAUUU-GCCACGU---------------AG-UAAAUAAGG
(((((((.(.(((.((((((.......))((.(((((..((((((.....))))))...))))).))))))...))).).)))-))))...---------------..-......... ( -29.00)
>DroAna_CAF1 171271 100 - 1
CGGCGAAGUGGCUGCUGCCAGAGAUAAUGGAAUUUGUGGCGUUGGCGUUGCUUAUGACAGCAAAAUUGCAGGUAAGUGGCUUU-GGGAACUGCU-CCA-------GGA-U--------
...((((((.((((((((((.((((......)))).))))....((((((((......)))))...))).))).))).)))))-)(((.....)-)).-------...-.-------- ( -29.20)
>consensus
CGGCGAAGUGGCUGCUGCCAGAGAUAAUGGAAUUUGCGGCGUGGGCGUUGCUUAUGACAGCAAAAUCGCAGGUAAGUGGAUUU_GGCAAGA_______________AA_UAAAU_AAG
..((((..((((....)))).......((..((..((((((....))))))..))..))......))))................................................. (-19.67 = -19.50 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:11:38 2006